KEGG   Solanum lycopersicum (tomato): 101255434
Entry
101255434         CDS       T02665                                 
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03018  RNA degradation
sly03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101255434
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101255434
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sly03019]
    101255434
   03041 Spliceosome [BR:sly03041]
    101255434
Messenger RNA biogenesis [BR:sly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     101255434
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     101255434
Spliceosome [BR:sly03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    101255434
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 101255434
NCBI-ProteinID: XP_004230242
UniProt: A0A3Q7ENK8
LinkDB
Position
1:85776128..85780711
AA seq 148 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRGDRKPPGVGGRGRGRGGRDEGGAAGRQGKGIGRG
MEDAGAKGRGKGGPGAKSGGKGGGRGRG
NT seq 447 nt   +upstreamnt  +downstreamnt
atgcttcccctctctttgctcaagactgcacaggggcatcccatgctggtggaactaaaa
aatggagagacttataatggtcatttggtgaattgtgatacttggatgaatatccatctt
cgtgaagttatctgtacgtcaaaggatggagatagattttggagaatgcctgaatgttat
attcgtggcaataccataaagtatcttagagttcctgacgaggttattgataaagttcaa
gaagaaacaaaaagccgtggagatagaaaaccacctggtgtaggtggacgaggaagggga
agaggaggtagggatgaaggtggtgctgctggaagacaggggaaaggcattgggcgtgga
atggaagatgcgggcgccaaaggccgaggcaaaggaggacctggtgccaagtctggtgga
aaaggtggtggccgtggacgtggctga

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