Solanum lycopersicum (tomato): 101255870
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Entry
101255870 CDS
T02665
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03030
DNA replication
sly03420
Nucleotide excision repair
sly03430
Mismatch repair
sly03440
Homologous recombination
sly03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101255870
03420 Nucleotide excision repair
101255870
03430 Mismatch repair
101255870
03440 Homologous recombination
101255870
03460 Fanconi anemia pathway
101255870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sly03000
]
101255870
03032 DNA replication proteins [BR:
sly03032
]
101255870
03400 DNA repair and recombination proteins [BR:
sly03400
]
101255870
Transcription factors [BR:
sly03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
101255870
DNA replication proteins [BR:
sly03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
101255870
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
101255870
MMR (mismatch excision repair)
101255870
DSBR (double strand breaks repair)
HR (homologous recombination)
101255870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
DUF7189
Rhabdo_glycop_CD
PGAP1_3rd
Motif
Other DBs
NCBI-GeneID:
101255870
NCBI-ProteinID:
XP_004236053
LinkDB
All DBs
Position
3:complement(61745585..61749107)
Genome browser
AA seq
614 aa
AA seq
DB search
MAKMVSPDAISTILANPSPDSSSDLPEIIVQVVDLKPTGNRYMFSANDGKMKIKGILQSS
LSSEVISGSIQNLGLIRVIDYTLNDIPTKNEKYLIVTKCEAVSPALEVEYKAEVKSEDTG
IVLKPRQEETGIVLKPKQEYQTKSAAQIVHEQSGNMAPTARMAMTRRIQPLVSLNPYQGN
WTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAAKKFFDKFELGKVY
YISKGTLRVANKQFKTVQNDYEMTLNENSQVEEASNEEAFIPEIKFNFVPIDELGPYVNG
RELVDVIGVVQSVSPTMSIRRKSNNETVPKRDITIADETKKTVVVSLWNDLATHVGQELL
DMADKSPVVAIKSLKVGDFQGLSLSALSKSNIVVNPDLPEAKKLRSWYDSEGKETSLASI
GSGMSPSTKSGARSMYTDRVSLLHITSNLSLGEEKPVFFSLKAYISFIKPDQTMWYRACK
TCNKKVTEAFGSGYWCEGCQKNDAECSLRYIMALRVSDASGEAWLSTFNDQAEKILGCSA
DELDKLKSEEGETAYQMKLKEATWVPHLFRVSVAQQEYNNEKRQRITVRAIAPVDYEAES
KYLLEEMSKMNIAI
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaatggtcagcccagatgctatttcaactattttagcgaacccatcgccggat
tcttcttcagatcttcctgaaattattgttcaagtagtggatctcaagcccactggcaac
agatacatgttttcagccaatgatgggaaaatgaagattaaggggattcttcaatctagt
ttgtcatctgaagttatatctgggtctatacagaacctgggtcttattcgggttattgat
tacaccctcaatgatatcccaactaagaatgagaagtacttgattgtaactaaatgtgag
gcagtgtctcctgctcttgaagttgagtacaaggctgaagtgaaaagtgaagacactggc
attgtcttgaagccaaggcaggaagagactgggattgttttgaaacctaaacaggaatat
caaactaaatctgctgctcaaattgtacatgaacaaagtggaaacatggcaccgactgct
cgaatggcaatgacaagaagaattcagccacttgtctctttgaacccttaccaaggaaat
tggaccattaaggttcgagtaactagcaagggtaatatgcgaacctacaagaatgctcgt
ggagaaggctgtgtgttcaatgttgaattgactgatgaggatggtacccaaatacaagct
acaatgtttaatgaagctgcaaagaagttttttgacaagtttgaattggggaaagtatat
tacatttcaaagggaactcttcgagttgccaacaagcaattcaaaactgtacaaaatgat
tatgagatgactttgaatgaaaattcccaagttgaggaggctagcaatgaagaagctttt
attccagagataaagtttaactttgtcccaattgatgaattgggcccttatgtcaatggc
agggagcttgttgatgttattggggtggtccaaagtgtatctccaacaatgagcatacgg
aggaagagtaacaatgagacagtcccaaagcgtgatataactattgcagatgagacgaag
aagactgttgttgtttctctttggaatgatcttgccacccatgttggacaagaactgcta
gacatggctgataaatctcctgtagttgcaatcaaatcccttaaagttggagacttccaa
ggattgtctttatcagcattaagcaaaagcaatattgttgtgaatcctgatttacccgaa
gccaaaaaattgagatcttggtatgattctgaaggtaaagaaacttcattggcatctatt
ggttctgggatgagcccttctaccaagagtggagcaagatctatgtatactgatagggtt
tccttgcttcatataaccagtaacctgtcccttggtgaggagaagcctgtctttttcagc
ttgaaagcatacataagtttcattaagcctgatcaaaccatgtggtatcgggcttgcaag
acatgcaacaagaaagttactgaagcttttgggtctggatattggtgtgaaggatgccag
aagaatgatgcagagtgcagtttgagatatataatggcattgagagtgtctgatgcaagt
ggtgaagcatggctctctacattcaatgatcaagcagagaaaatacttggatgctctgct
gatgaacttgacaagctgaaatcagaggaaggagaaactgcatatcaaatgaaattgaaa
gaagctacatgggttcctcaccttttccgggtcagtgttgcacaacaagaatacaacaat
gagaaaaggcaaaggataacagtcagagctattgctccagttgattatgaagcagaatcc
aaatacttgctggaagaaatgtctaagatgaacattgctatttaa
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