Solanum lycopersicum (tomato): 101255875
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Entry
101255875 CDS
T02665
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
101255875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sly03400
]
101255875
Enzymes [BR:
sly01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
101255875
DNA repair and recombination proteins [BR:
sly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
101255875
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
SAP
Motif
Other DBs
NCBI-GeneID:
101255875
NCBI-ProteinID:
XP_004236570
UniProt:
A0A3Q7G0S5
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Position
4:complement(8000778..8009077)
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AA seq
539 aa
AA seq
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MLQSFKFGLYNFITSNSVGVISRIPKFQVLVSVNLTIMGSKKRPFSTSSATGKSNEQVSV
AAEKGVSKENVGKSGEILVEDMGTVEKMTVPQLRVKLRSLGIPSRGTKQELVASLKTFLD
SKLDDAGNGSVAQEDKVSSEESLEVAANPSKKKSRKLPSKNRNQSNVTSEVPTTRQTKRR
VTKGQTEDTSFDIIVKQTEITQEMSIESNDIKGKKNVRAKRKVSSATVSAHIGVSEAADL
SVNQDEPWTIFAHKKPKDGWIVYNPKTMRPPPLSKDTKHVKLLSWNVNGLRALLKLKNLC
IQQLADREDFDVICLQETKLQEKDVEAIKESLHDYKNSFWTCSVSKLGYSGTAIISRIKP
VSIKYGLGIPDHDTEGRLVTVEFDNFYLLCGYVPNSGDGLRRLTYRITEWDPSLGSYMKE
LEESKPVVLTGDLNCAHEEIDIYNPTGNKRSAGFTEEERQSFETNFLNKGFVDTFRKQHP
GVVGYTYWGYRHGGRKTNKGWRLDYFLVSECISEKVHDSYILPDVDGSDHSPIGLVLKL
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgttacaatcttttaagtttggtctttacaatttcatcacttccaatagtgttggagtc
atttcaaggatacccaagtttcaggttttggtttctgtgaatttgacaataatggggtct
aaaaaaagacccttttcaacctcatcagctactggaaaatcaaatgaacaagtgagtgtt
gcagctgaaaagggtgtttcaaaggaaaatgttggcaagagtggggagattcttgtggag
gatatgggaacagtagagaaaatgactgttcctcagctcagagtaaaacttaggagtctt
gggattccttccagaggtactaagcaagaacttgttgcttctttgaagactttcctcgac
agcaaacttgatgatgcaggcaatggatctgtggcacaggaggataaagtatcatctgag
gagagtctagaagtagcagctaacccttcaaaaaagaagtccagaaaattgccaagtaag
aatcgcaaccaaagcaacgtcacatctgaggttcctactactcggcagacgaaaagacga
gtcacaaaaggccagactgaggataccagttttgacattattgttaaacaaactgaaatt
acccaagaaatgtccattgaatctaatgatatcaaaggcaagaaaaatgtacgagcaaag
agaaaagtttcatcggcgactgtttcagcacacataggagtttctgaggctgctgatctt
tctgtaaatcaagatgaaccttggactattttcgctcacaagaagcccaaagatgggtgg
attgtatacaatcctaaaacaatgaggccacctcctctttcaaaggatactaaacatgtt
aagttattgtcttggaatgtcaatggtctgagggctctattaaagttgaagaatctttgc
atacagcagcttgctgatagagaagattttgatgtaatatgcctacaggagactaaacta
caggaaaaagacgttgaagcgatcaaggaaagtctccatgactataagaatagcttttgg
acatgcagtgtctctaagcttggatattctggtactgcaatcatctcacgaattaaacca
gtttctatcaaatatggtctcggtataccagatcatgatactgaaggacgacttgttacg
gtggaatttgataacttctatttgttgtgtggatatgttccaaattctggtgatggacta
cgccgattgacatacagaattacagagtgggatccttctcttggcagttacatgaaagag
ctagaggagtcgaaacctgttgttttgaccggtgatctaaattgtgcccacgaggagata
gatatttataatcctactggaaataaaagaagtgcaggctttactgaagaagaaagacag
tctttcgaaacgaactttctaaacaaggggtttgtagatacattcaggaagcagcatcct
ggtgtcgttggttatacttattggggttaccgccatggtggacgtaaaactaataaagga
tggcggcttgactacttccttgtctcggaatgcatttctgagaaggtgcatgactcgtac
attctgccagatgtagatggcagtgatcacagtcccattggccttgtcctgaagctgtag
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