Solanum lycopersicum (tomato): 101256312
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Entry
101256312 CDS
T02665
Name
(RefSeq) exosome complex exonuclease RRP46 homolog
KO
K12590
exosome complex component RRP46
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101256312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101256312
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
101256312
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
101256312
NCBI-ProteinID:
XP_004245172
UniProt:
A0A3Q7IK59
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Position
8:56928514..56939183
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AA seq
232 aa
AA seq
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MEIDRKDGRTANQLRPLSCARNVLNRAHGSASWSQGETKVLAAVYGPKAGTNKNENPEKA
CFEVIWKPKTGQIGKAEKEYEMILKKTVQSICVLNVHPNTTTSIIIQVVNDDGALLPCAI
NALCAALVDAGIPLKHLAVAICCCLTESGHILLDPSKLEEQRMKAFVYLVFPNSTLSVLP
EEALKVRGEPMEHGLITSSTHGVMSVDDYIRCLERGRAATSKLSDFFRRNLQ
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atggagattgatagaaaagatgggagaacagctaatcaattgagaccattgagttgcgct
cgtaatgttcttaatcgcgctcatggctctgcaagttggtctcaaggggagacgaaagtt
cttgctgctgtttatggaccaaaggctggaacaaacaagaacgagaatccagagaaggca
tgttttgaagtcatttggaagccaaaaactgggcagattggtaaagcggagaaggagtat
gagatgattttgaagaagaccgtgcaaagcatttgtgttttgaatgttcatccaaatacc
accacgtcaattatcattcaggttgtcaacgatgatggagctcttcttccatgtgccata
aatgcattatgtgctgcccttgtggatgctggcattcctttgaagcaccttgctgttgca
atatgttgttgtctaacagagagtggacatattctactggaccctagcaagctagaagaa
cagagaatgaaggcatttgtatatctagttttcccaaactcgacattatctgtgcttcct
gaagaagcattgaaagtgagaggtgaacccatggaacacgggcttataacatcttctacg
catggtgtaatgtcggttgacgactacatacgctgtttggagaggggacgtgctgccact
tccaagttgtctgattttttcaggagaaacttgcaataa
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