Solanum lycopersicum (tomato): 101256343
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Entry
101256343 CDS
T02665
Name
(RefSeq) THO complex subunit 4D
KO
K12881
THO complex subunit 4
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03013
Nucleocytoplasmic transport
sly03015
mRNA surveillance pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101256343
09122 Translation
03013 Nucleocytoplasmic transport
101256343
03015 mRNA surveillance pathway
101256343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101256343
03041 Spliceosome [BR:
sly03041
]
101256343
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101256343
TREX complex
101256343
Spliceosome [BR:
sly03041
]
Complex C
Other components
EJC/TREX
101256343
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101256343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Motif
Other DBs
NCBI-GeneID:
101256343
NCBI-ProteinID:
XP_004250178
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All DBs
Position
11:complement(4794629..4800018)
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AA seq
283 aa
AA seq
DB search
MASLDMTLDDMIKSRRNTERGGRGQGRARRGRGAGGSFRGGSFRGGRTTGAPRRGPLGVN
ARPSAYTIAKTFRRTKNLPWQNGLFEDSLRAAGLSSVLESGTKLYVSNLDVGVTNEDIRE
LFSEMGELVRFAIHYDKNGRPSGAAEVVFARRSDAFQALKRYNNVQLDGKPMKIEIVGSN
PEIPLSARVNVVGGTNRRRTVVMAPGGPARGRGAATSRGSSQRGRGGLRNAPGRGRGGGG
GRGWGRGRGRGGRGSSSRGADKSAEDLDKELDSYHANADAMQT
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atggcttcactggatatgaccctggatgatatgataaaaagtcggagaaatactgagagg
ggtggtaggggtcaaggcagggcccgacgcggaagaggggcagggggttcatttagaggt
ggatcatttagaggtggaaggacaacaggggctcctcgtagagggccacttggcgtgaat
gctcggccatcagcctacaccattgccaagactttccgcagaaccaagaatttgccatgg
cagaatggtttgtttgaagatagccttagagctgcaggactgtcatcagtattggagagt
ggcacaaagttatatgtttctaatttagacgttggagtgactaatgaagatataagggaa
ctcttttcggagatgggagaactagtacgatttgcaatccactatgacaaaaatggacgt
ccaagtggcgctgctgaggtggtctttgccagaagaagtgatgcattccaagctcttaag
agatataacaatgtgcagttggatgggaagcctatgaagattgaaatagttggttccaac
ccagaaattcctttgtcagctcgtgtaaatgtagttggaggaaccaaccggaggaggact
gtggttatggcgccaggtggtccagctcgtggaagaggagctgctactagtcgtggttct
agtcaaaggggccgtggtggtttgaggaatgcacctggacgtggtcgaggtggtggtggc
ggtcgtggttggggtagaggtcgtggccgcggtggtaggggaagtagcagcaggggcgct
gataagtcagctgaggatcttgacaaggaactggacagctaccacgccaacgctgacgcc
atgcaaacttag
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