KEGG   Solanum lycopersicum (tomato): 101256344
Entry
101256344         CDS       T02665                                 
Name
(RefSeq) chromatin structure-remodeling complex protein BSH-like isoform X1
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03082  ATP-dependent chromatin remodeling
sly03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    101256344
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    101256344
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:sly01009]
    101256344
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sly03021]
    101256344
   03036 Chromosome and associated proteins [BR:sly03036]
    101256344
Protein phosphatases and associated proteins [BR:sly01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     101256344
Transcription machinery [BR:sly03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     101256344
    SWI/SNF complex
     101256344
Chromosome and associated proteins [BR:sly03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    101256344
   PBAF complex
    101256344
   SWI/SNF complex
    101256344
SSDB
Motif
Pfam: SNF5
Other DBs
NCBI-GeneID: 101256344
NCBI-ProteinID: XP_004250571
UniProt: A0A3Q7ITM6
LinkDB
Position
11:7086948..7102634
AA seq 242 aa
MMKPPSTSGSPKNPVKFRLPTAENLVPIRLDIEIDGKKFKDAFTWNASDPDSEVFAFARR
TVKDLKLPTAFAFQIAQSIQSQLLEFRSYEGKDMHTGEKVVPIKLDLRVNQTIIKDQILW
DMNNFEGDPEEFARTFCEDMKIEDPEVGPAIAIAIREQLYEIAKQGVAFMRESRTNKKGR
KGMEHLSASKVGSPALDLGKLFDPEGSIQRKMSERDAYGPVVDHLSKEEVDALEAREERL
PR
NT seq 729 nt   +upstreamnt  +downstreamnt
atgatgaaacccccttcgacatcgggttcaccgaagaacccagtgaagttcagacttcca
acagccgagaatcttgtacctatccgtcttgacatcgaaattgatggtaaaaaatttaaa
gatgcttttacttggaacgcaagtgatcctgactcagaggtgtttgcgtttgcgaggaga
actgtaaaggatttgaaacttcctactgcttttgcctttcagattgctcaatccatccag
tcccaattgttagaatttcggtcatacgaaggaaaagatatgcacactggcgagaaagtt
gttcctatcaagcttgatctccgagtaaatcagacaattataaaggaccagattttatgg
gacatgaacaattttgagggtgatcctgaagaatttgcacggacattttgtgaagatatg
aaaattgaagacccagaagttggacctgcaattgccatagcaattagagaacaactttat
gagattgcgaagcaaggtgttgcattcatgagagaaagcaggacaaataagaaaggacgc
aaaggaatggaacacctctcagccagtaaagtaggttcgcctgcactggacctggggaag
ctattcgaccctgaaggaagtatccaacggaaaatgagtgaacgggatgcatatggacca
gtagtcgatcacctgtcaaaggaagaggtggatgccctcgaggctagagaagagaggctt
cctcggtga

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