Solanum lycopersicum (tomato): 101256382
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Entry
101256382 CDS
T02665
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03440
Homologous recombination
sly03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101256382
03450 Non-homologous end-joining
101256382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sly03032
]
101256382
03400 DNA repair and recombination proteins [BR:
sly03400
]
101256382
DNA replication proteins [BR:
sly03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
101256382
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
101256382
BRCA1-C complex
101256382
NHEJ (non-homologous end-joining)
MRX complex
101256382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_15
AAA_21
Rad50_zn_hook
SbcC_Walker_B
APG6_N
AAA_29
ABC_tran
AAA_16
Motif
Other DBs
NCBI-GeneID:
101256382
NCBI-ProteinID:
XP_010321406
UniProt:
A0A3Q7HGI7
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All DBs
Position
5:67075174..67099537
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFRPLTLIVGANGAGKTTVIECLKVACTGDMPPNCR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKATKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQEPGTLKKKFDDI
FSATRYTKALEVIKKLHKDQSQEIKAYKLKLENLQTLKDAAYKLRESISQDKEKTEALKS
QMEELEKEIQTLDSKIHHTEATLKDLHQLQRDIATKNAERSTLFKEKEKQYAALAEENED
TDEELREWKTKFDERIALLESKISKLEREMNDSEAKSSFLKQSITNYIMEISKLQADAEA
HAELKNERDFTLRKLFDRHNLGAVPTGSLSDDVASNLTNRIKLRLTDFDKDLQDKKKSNE
AEIAAAWHLYDIANREWSEKEAQKQAKADIKNGISKRIKEKEDERDVLERQISDVNVAHL
DEREKKMQIESERKSKQLAEREFDLNIRQKQTEMYTVDQKLKDLRDEKDHMAAESEDRIK
LSLKKAELGSLEKNHKKIIDDNKDKIKGVLKGRLPSDKDLKNEITQAQRALQREVDDLSV
KSREAEKEVNMLQMKIEEVNQNLTKYHKDMDSRKRFLESKLQLMDQEFAGIESYPKIMDS
VKEKRDVQKSKFNIADGMRQMFDPFERVARAHHICPCCERPFSAEEEDEFVKKQRVKAAS
SAEHIKVLAMESSNADSRLQQIDKLRLVYEEYVKVGKESIPQAEKNLNELNEELDQKNQA
LDDVLGVLAQIKAEKDAVDALIQPVETFDRLFQEIQVRQKQVDDLEYGLDIRGQGVRSME
EIQSELDELQSKKDNLYTEVEKLRNDQRYMENEYASFQLRWANVREEKSRVANRLEQIKR
IEEELDRFTEEKNQIELEEKHLADAFGSLLKEKDKHFRDHKDLKIKLGEQLEEQAEIRRN
YQQEVDSLLKITSKIKEYYDLKKEQRLNELQDKRSLSESQLQSCESRKDAILAEVKKSKD
LMGNQDRLRRNIEDNLNYRKIKSEVDELTHEIELLEDKVLTLGGFSSVEAELKKLSHERE
RLLSELNKCHGTLSVYQSNISKNKVDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHSMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGSGTRSYSYKVVMLT
GDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAAALL
RIMEDRKGQENFQLIVITHDERFAQYIGQRQHAEKYYRISKDDHQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgtagataagatgctcataaagggcatccggagttttgacccggagaacaaa
aacgttatcacctttttccgaccattaactctcatcgtcggagctaacggcgccggaaaa
actactgtaattgagtgcttgaaggttgcttgcactggtgatatgccgccaaattgtcgc
tctggtcatagcttcatccacgaccctaaggtggctggagagacggagacaaaggggcag
ataaagctgcggttcaaaacagcagcagggaaagatgtggtgtgcattaggtcttttcag
ctaactcagaaggcaacaaagatggaatacaaggccattgagagcgttctacagactata
aatcctcacactggagagaaagtttgcctaagttatagatgtgccgatatggaccgagaa
atccctgctctcatgggtgtctcaaaggccattcttgaaaatgtgatatttgttcaccaa
gatgaggcaaactggccattacaagaaccgggtacgctgaaaaagaagtttgatgatatc
ttctccgctactagatacacaaaggcattggaggttatcaaaaagcttcacaaggatcaa
tctcaagaaataaaggcgtataagttgaaattggagaatcttcagacattgaaagatgct
gcttacaagttgcgggaaagcatttctcaggacaaagagaaaacagaggcactgaagagt
cagatggaggaacttgaaaaagagattcagactttagatagtaagatccaccataccgaa
gcaactttaaaggaccttcatcaattgcagcgagacatagccaccaaaaatgctgaaagg
agcacattgttcaaggaaaaggaaaagcagtatgcagcacttgcagaggagaatgaagac
actgatgaagaactgagggagtggaaaacaaagtttgatgaaaggatagcacttctggaa
tcaaagattagcaagttggagagggaaatgaatgactcagaggcaaagagttcctttctt
aagcagtccataacaaactatatcatggagatcagcaaacttcaagctgatgccgaagct
catgcagagttaaaaaatgaaagagacttcactctcaggaagctttttgacagacacaac
ttaggggctgttccaactggatcactcagtgatgacgttgcttcaaatttaacaaatcgt
ataaaactacgattaacagattttgataaggatttacaagataaaaagaaatcaaatgag
gcagaaattgcagctgcatggcatctatacgacattgcaaaccgcgaatggagcgaaaag
gaggcgcaaaaacaggctaaagcagatattaagaacggcatttcaaagcgcattaaagag
aaagaggatgaacgtgatgtgcttgaacggcagatttctgatgttaatgtggctcatctt
gatgagagggaaaagaaaatgcaaattgaatctgagaggaagtctaagcagctggcagaa
agagaatttgatttgaacataaggcaaaaacagactgaaatgtacaccgtagaccaaaaa
ctaaaagatcttcgcgatgaaaaagatcatatggcagctgagtctgaggacagaattaag
ctctctcttaagaaggcagagttgggaagtctcgagaagaatcataaaaagataatagat
gataataaggataagataaaaggagtgttgaaaggaaggcttccatctgacaaggacttg
aagaatgaaattactcaggcacaaagggctcttcagagagaggttgatgacttgagtgtc
aaatcccgcgaagctgagaaagaggtcaatatgttgcagatgaaaatagaagaagtcaat
cagaacttgactaaatatcacaaagacatggactcaagaaagagatttctggaatcaaag
ctccagttgatggaccaggaatttgctggtatagagtcctatcccaaaattatggactca
gtcaaagagaaaagggatgtccagaaaagcaagttcaacattgccgatggaatgcggcaa
atgttcgatccatttgaaagagttgctcgtgctcatcatatttgcccttgttgtgagcgt
cctttctctgctgaagaggaggatgaatttgttaagaagcaacgtgtaaaagctgcaagc
tctgctgagcatattaaagtattggctatggagtcttcaaatgctgattctcgtttgcaa
caaatagacaagcttcgtttggtttatgaagagtatgtcaaagttggaaaggagtcaata
cctcaagcagagaagaacttaaatgagctgaatgaagaattggaccaaaaaaatcaggct
cttgatgatgtgttaggtgtcttggctcagataaaggctgagaaggatgcagttgatgcg
ctaatacaacctgtagaaacatttgacaggcttttccaagaaattcaagttcggcagaag
caggttgatgatttggaatatggtctagatatccgtgggcaaggggtaagatccatggag
gaaattcaatcagaattggatgaactgcagagcaaaaaagacaatttgtatacggaggtg
gagaagctgagaaatgaccagagatacatggaaaatgaatatgcaagtttccaactaaga
tgggctaatgtaagggaagagaagtcacgagtagcaaacagattggagcaaattaaaagg
atagaagaggaattggatcgcttcacggaggagaaaaatcaaattgagcttgaagagaag
catcttgcagacgcttttggttccttattgaaggaaaaggacaaacactttagagaccac
aaggatctgaaaataaaacttggtgaacagttggaagagcaggcagaaattagaagaaat
tatcaacaggaagtagattcacttttgaagattacctccaaaattaaagaatattatgat
ttgaagaaagaacaaagattgaatgaactgcaggacaagcgaagcctgtcagaatctcaa
ctccaaagttgcgagtccagaaaggatgcgattttggctgaagtgaagaaaagtaaggat
ttaatggggaaccaggataggttgagacgtaacattgaggataacttgaactatcgtaaa
attaagtctgaagttgatgagctcactcatgagattgaattactggaagataaagtgctg
acgttgggtgggttttcttctgttgaagctgagcttaaaaagctttcacacgaaagagag
aggctactctctgagttaaacaagtgtcatggcaccttatctgtttatcaaagcaatatc
tccaagaacaaagttgatcttaagcaggcacaatacaaggatattgacaaacgctatttt
gatcagctaatccagcttaagactacggagatggcaaacaaggatctggacagatattac
aatgcccttgataaagcactgatgcgattccactcaatgaaaatggaagaaataaataag
attatcagggaactgtggcaacaaacatacaggggccaggacatagactacataagcatt
cattcagattctgaaggatctggcactcgatcctacagctataaggttgtgatgttgact
ggtgatactgaactagaaatgcgagggaggtgtagtgctggccaaaaggtccttgcatca
ctcatcatacgattggcgttggctgaaactttttgtctcaactgcggaattctagcactg
gatgaacctaccacaaacctagacggccccaacagtgagagtcttgctgcagctctgtta
agaattatggaggacagaaaaggccaagaaaactttcaactaattgtcattacacacgat
gagcgatttgctcaatatattggccaacgccagcatgcagaaaagtattatcgcatctca
aaagacgaccatcagcacagtataattgaagctcaggaaatatttgattga
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integrated database retrieval system
