Solanum lycopersicum (tomato): 101256472
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Entry
101256472 CDS
T02665
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101256472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
101256472
Spliceosome [BR:
sly03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
101256472
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
DSE1_N
NBCH_WD40
CFAP251_N
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_Vps41
PRP4
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_WDR41
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_DCAF4
PAC11
WD_LRWD1
ASA1
Beta-prop_SCAP
eIF2A
Beta-prop_NOL10_N
Nbas_N
Beta-prop_SPT8
WD40_like
Tricorn_2nd
Motif
Other DBs
NCBI-GeneID:
101256472
NCBI-ProteinID:
XP_004236572
UniProt:
A0A3Q7G2B1
LinkDB
All DBs
Position
4:7980285..7984735
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AA seq
580 aa
AA seq
DB search
MDAMDAEDEVPVSTSETSTLVDDNSTVVNATGAVNLQPVPAVIPPVVPTAILPPVVPAIA
PRLAVPPPIPPPLAPLPVRPPVLRPPVAQNGEMQENDSDSDLEEMVSGRGAAGSTQEYEI
SEESRIVRERQEKALQELLMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDR
LRMLMARLDAEGQLEKLMKAHEDEEAAASAAPAEEEDIQYPFYTEGSKALLDARVEIAKY
SLVKSALRLHRARRKRDDPDEDVDAEVDWALKQAGSLALDCSEIGDDRPLFGCSLSHDGK
MLATCSLSGIAKIWSMPQVQKVSTLKGHTERATDVVFSPTSNYLATASADKTARLWNSEG
SLLRTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWNVESGEELLLQEGHSRSVYGLSF
HHDGSLVASCGLDALVRVWDLRTGRSILALEGHVKPVLGVSFSPNGYHLASGGEDNTCRI
WDLRQRRSSYIIPAHSNLISQVKFEPQEGYFLATASYDMTAKVWSSRDFKPVKTLSGHEA
KIMSLDVASDGQFITTVSYDRTIKLWSSKNIEKEEKMDMD
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggatgctatggatgctgaggatgaggttcctgtttcaacttcagaaacttcaactcta
gttgatgataattcaactgtggttaatgctacaggtgcagttaatcttcaaccagttcca
gctgtcattccaccagttgttccgacggctatccttcctcctgtcgtgcctgcaattgct
ccaaggcttgcagttcctccccctattcctcccccattagctccgttgcctgttcgtcca
cctgtccttaggcctccggtagcacagaatggagaaatgcaagagaatgattcagattca
gaccttgaagaaatggtatccggtcgtggtgctgcgggctccacgcaagaatatgagatc
tctgaggagagtagaattgtccgagagaggcaggagaaggccctgcaggagcttctcatg
aagagacgtgctgctgcgcttgcagttcccacaaatgatatggccgttcgagctcgactg
cgaaggcttggcgaacccataactctctttggagaaagggagatggaaagaagggatcga
ctgcggatgcttatggcaaggcttgatgcagaagggcagctggaaaagctgatgaaagct
catgaggatgaagaagctgcagcttctgcagcaccagcagaggaggaagatattcaatac
cctttttacacagaaggatcgaaagcacttttagatgctagggtagaaatcgcaaagtat
tccttagttaagtcagctttacgtctccatcgcgcaaggaggaaaagggatgatccagat
gaagatgtggatgcagaggttgattgggctttaaagcaagcagggagcctggcccttgat
tgcagtgaaattggagacgatagacccctttttggatgctcgctttcacatgatggaaaa
atgcttgcgacctgttctctgagtggaatagcaaagatatggagtatgcctcaagtgcaa
aaggtttccactctaaaaggtcacactgaacgagctactgatgttgtgttctctccgaca
agcaattatttagctactgcatctgctgacaagaccgcaaggttatggaactcagaaggt
tctctcctcagaacttttgaggggcatttggaccgtctagctcggattgcttttcatcct
tctggaaaatacttgggcacagctagcttcgacaaaacttggagattatggaatgtggag
agtggtgaagagctgcttttgcaagaaggtcacagtaggagtgtttatggattgtctttt
caccatgatggttcattagtggcatcatgcgggttggatgcacttgttcgagtgtgggat
ttaaggactgggcgaagtattcttgctctagaaggccacgtaaaaccggttcttggtgtc
agtttttcaccgaatggttatcatttggctagtggtggtgaagataatacctgtcgtatt
tgggacttgcggcagagaagatcttcttacatcataccagctcactccaatcttatctct
caagttaaatttgagcctcaggagggatactttttggctacagcttcgtatgatatgact
gctaaggtatggtcatcaagagatttcaaacctgtaaaaacactttctggtcatgaagca
aaaatcatgtcattggatgttgcatcagatggacaattcattacaaccgtgtcttatgat
cgaacaatcaagctatggtcaagcaaaaacattgagaaggaagagaaaatggatatggac
tag
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