Solanum lycopersicum (tomato): 101256694
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Entry
101256694 CDS
T02665
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101256694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101256694
04121 Ubiquitin system [BR:
sly04121
]
101256694
03036 Chromosome and associated proteins [BR:
sly03036
]
101256694
03400 DNA repair and recombination proteins [BR:
sly03400
]
101256694
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
101256694
Ubiquitin system [BR:
sly04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
101256694
Chromosome and associated proteins [BR:
sly03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
101256694
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
101256694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_2
BRCT
zf-HC5HC2H
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-HC5HC2H_2
zf-RING_2
zf-RING_6
zf-C3HC4_3
zf-C3HC4_4
RTT107_BRCT_5
zf-RING_5
PHD_NSD
PTCB-BRCT
zf-RING_10
zf-UDP
Motif
Other DBs
NCBI-GeneID:
101256694
NCBI-ProteinID:
XP_004244877
UniProt:
A0A3Q7HMJ2
LinkDB
All DBs
Position
8:32192885..32199481
Genome browser
AA seq
998 aa
AA seq
DB search
MADISHLERMGRELKCPICLSLFNSAVSLTCNHVFCNLCIQTGMKSGSNCPVCKVPFHRR
EIRPALHMDNLVSIYKNMEIASGVNMFLTQSNPSTKLPGENTRSNGEKVCGFQETPKTVT
EAPATDNQKRKRGKGSKRSSGCNKKISGSNLIRPSFPTKKRVQVPQYPPSETPPPTKLVD
GNGKSITDEVQKPLVIERDRSMLNEKGEPVLSPFFWLREEDVDKSSQQTDGDVIMDTPPA
FPSFSDMKDLDDEVHCEMTPKSGPYDAANGADLFDSEMFDWTQRACSPELCSSPFKMKLK
DTIDSAEAQEKTQAHSVEESDINASATENRTAVENEKGTDKGQLSSPAIFSPVNKTTSRK
DVVCKSSRSKSLRSSQKKQGKNIIGELSEVHDASLKAAENTMKNNQDNANAFISNKKDSK
NKKKGRSSRNVTESVVEDISTSCGAKRLRKGNNSKSFNLSTIVNQEKHSEGSVETLDLKT
HNIFRKGSLREQAKNCFGPKGGKKTAVCNIPQIQDEALPFESANRLIPMDNKKPTRSTKL
KKCELGSDNKLHGKKKVKFSDDGQLADKDNITLQKIQKRVLNSLETDKSVLNSNDSVLQK
CEASQSKIQCAFCRSAEISEVSGIMVSYLNGNPVKEDVNGAPGVIHVHKYCAEWAPNVYF
GDDDVVNLESELKRSRRITCFFCGVKGAALGCYEMSCRKSFHVPCAKLTPECRWDSDNFV
MLCPLHANSKLPSEIPGKQTKIGDSIKRNSRIHQPNVSATPDNGATLQWKSQKKNKNLVL
CCSALTADEKELVSKLKRLSGVTVVKNWDLSVTHVIASTDEKGACRRTLKYLMGVLAGKW
IMSINWIIASLEATEYVDEQQYEIKIDTHGIVDGPKLGRLRILNKQPKLFNGYKFFFMGD
FLSSYKSYLHDLVIAAGGIVLNRKPIALDQEILSPGCPLLFVIYSHEQLDQCEGSEKISI
IARRRSNAEVLASSTGAVAASHSWILNCIAGSRLLELE
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggcagatatttcgcaccttgaaagaatgggaagagagctcaaatgccccatttgcttg
agtctgttcaattctgctgtttcacttacatgtaatcatgtattttgcaatttatgtatt
caaactggtatgaaatctggatccaattgtccggtgtgcaaagttccatttcatcgcaga
gaaatccgacctgctctccacatggataacttggtgagcatctataagaacatggaaatt
gcttcaggagtcaatatgtttctcactcaatccaatccttccacaaaattaccaggggaa
aacactcgatctaatggcgaaaaagtttgtggattccaagagacacctaaaactgtaaca
gaagctccagcgacagacaatcagaaaagaaaaagagggaaaggatcaaaaagatcttca
gggtgcaacaaaaaaatttccggatcaaatcttattagaccttcttttccaacaaagaag
agagtacaggtgccacaatatccaccttcagagactccaccacctacaaagttagttgat
ggaaatggcaaatccatcaccgatgaagttcagaaaccattggtaattgagagagatagg
tctatgctaaatgaaaaaggagaacctgtgctatctccattcttctggctgagagaagag
gatgtagataaatcaagtcagcaaacagatggggacgttatcatggatactcctccagct
tttccatccttcagcgatatgaaagacttggatgatgaggttcactgcgaaatgactcca
aaaagtggaccctatgatgcagcaaatggagcagatctttttgacagtgagatgtttgac
tggacacaaagagcttgctcccctgaactttgttctagtccctttaagatgaagcttaag
gatactattgattctgctgaagctcaggaaaagactcaagctcactcagttgaggaaagt
gacattaatgcatcagcaactgaaaacagaacagctgtggaaaatgaaaagggtactgat
aaaggacagctgagttcacccgcgatattttctcctgtaaataaaaccactagtagaaaa
gacgttgtttgcaagtctagcaggagcaagtcattgagaagtagccagaagaaacaagga
aaaaacataattggagaattatcagaagttcatgatgcttcactaaaagcagctgaaaac
actatgaagaacaatcaggataatgccaatgcatttatctcgaataagaaggattcgaaa
aacaagaaaaagggtagatcctctagaaatgtcactgagtcagttgtagaagacatttcc
acttcatgtggtgctaaaagacttcgcaagggcaataactcaaagtccttcaacttgtct
actattgtgaatcaggaaaaacatagtgaaggaagtgtcgagacacttgacttgaagacg
cataatatattccgcaagggatcattacgtgaacaagctaaaaactgttttggaccaaaa
ggcggaaagaaaactgctgtgtgtaacattccacaaattcaagatgaagctttgcctttc
gaatcagcaaatagattgattcccatggataacaagaaacctactcgtagtacaaaactg
aagaaatgtgagcttggtagtgacaacaagcttcatgggaagaaaaaagtgaagttttct
gatgatgggcagcttgctgacaaggataatattacgcttcaaaagattcagaagagagtg
ctcaattcattggaaacagataaatctgttttgaactcgaatgattcagttttgcagaag
tgtgaggcaagccaaagcaaaatacaatgtgctttctgccgttcagcagagatatctgag
gtttcaggaatcatggtaagctaccttaatggaaaccctgtcaaagaagatgtcaatgga
gcaccaggtgttatacatgttcacaaatattgtgcagaatgggcccctaatgtatatttt
ggagacgatgatgtggtcaaccttgaatctgaactgaagaggagtcgaaggatcacttgt
tttttctgtggagtaaagggggcagctcttgggtgttatgagatgagttgtcgcaaaagc
tttcatgttccttgtgccaaattgacaccagagtgtagatgggattctgataactttgtt
atgttatgccctttgcatgctaactctaagttgccatccgagatcccaggaaaacagaca
aagattggagatagcattaaaagaaattctcgtatccaccaacccaatgtctcagcaaca
cctgataatggtgctactttgcagtggaagtctcagaagaagaataagaacttagtgctc
tgttgttcagctctaaccgcagatgaaaaagagcttgtttctaaattaaagaggttgtct
ggcgtgacagtagtcaagaactgggacctaagtgtcacccatgtcattgcttctactgat
gagaaaggagcatgccgaagaactctcaagtatttgatgggtgtcttggctgggaaatgg
ataatgagcatcaactggattattgctagcttggaagccacagaatatgtcgatgaacaa
caatacgagattaaaatagatactcatggcattgtggatgggcctaagcttggaagattg
aggattttaaacaagcaaccaaagcttttcaatggatacaagttcttttttatgggcgac
tttttatcttcatacaagagctacctacatgaccttgttattgctgctggaggaattgtc
cttaacaggaagcctattgcactggatcaggaaattctttcacccggatgccctctactg
tttgtaatttatagtcatgaacaacttgatcagtgcgaaggaagtgaaaaaatttcaatt
atagcgcgcagaagatctaatgcagaagttttggctagttcaactggagctgtagctgcc
agccactcctggattctaaactgcattgctggctctaggttgttggagctggaatag
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