Solanum lycopersicum (tomato): 101257051
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Entry
101257051 CDS
T02665
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly04120
Ubiquitin mediated proteolysis
sly04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
101257051
04120 Ubiquitin mediated proteolysis
101257051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sly04121
]
101257051
Enzymes [BR:
sly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101257051
Ubiquitin system [BR:
sly04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101257051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_Vps41
zf-RING_5
zf-RING_11
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
101257051
NCBI-ProteinID:
XP_004235314
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All DBs
Position
3:complement(56109835..56117373)
Genome browser
AA seq
530 aa
AA seq
DB search
MMRLQTYAGLSLIATLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVVMCILWQM
TKKIFLGPLREAEVERLNEQSWRELMEILFAITIFRQDFSVTFLAMVTALLLIKGLHWLA
QKRVEYIETTPTVTRLSHIRIVSFLGFLLFIDSLFLYDSMNYLIQTRQASVSLFFAFEYM
ILATTTVSTFVKYVFYISDMLMEGQWENKPVYTFYLELIRDLLHLSLYLCFFMVIFMNYG
VPLHLIRELYETFRNFRSRVADYVRYRKITSNMNDRFPDATPEELNASDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPTENGTNVAGSRPDVQQGPGSSAASA
SQGSQANTTPSNNVSQHQARIQAAAAAAAVYQKSYVYPSVPTLAWSPGYAPVPPSYSTVG
SSANVLSDGERALNEQSSHNQLANMPFAQYPQSGFLPFQYPGANNLGIPTSQLEAHKILL
QQQIEVLQTQLKLLEHPNIQKKADDLGISDSKGKAILSESSRGHTEGAEI
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggttacaaacttatgcggggcttagcttaatagctacactggctgttatttat
catgcctttaatagcagaggacaattttacccagcaatggtttatctgtcgacgtccaag
atcagtcttgtgcttcttctcaatatgggtcttgttgtcatgtgcattttgtggcagatg
acaaagaaaattttccttggtccacttcgcgaggctgaggtggagaggctgaatgaacag
tcttggcgggaactcatggaaatactttttgccatcacaatttttcggcaggatttctct
gttacctttcttgcaatggtaactgcactcttgcttatcaagggtttgcactggttggct
caaaagagagttgagtacattgaaacaactcctactgttactagattgtcccacattcgc
atagtatccttcctgggctttctcctattcatagacagtctctttttgtacgactcgatg
aactatttgatacagacgagacaggcatctgtttctctcttctttgcctttgagtacatg
atacttgcaacaacaactgtctcaacgtttgtaaaatatgtcttctacataagtgacatg
cttatggaaggacaatgggagaataagcctgtctataccttctacttagaacttatccga
gacttgctccacttgtctctttacttgtgcttcttcatggtgattttcatgaactatggt
gtgcccctgcatttgattcgggagctttatgagacattccgcaacttcaggagtcgagtt
gccgattatgtacgctatcggaagatcacttcaaatatgaatgaccgttttccagatgct
acaccagaggagctcaatgcaagtgatgctacctgcatcatttgtcgtgaggagatgacc
actgctaagaaactcatttgcggtcatctgtttcatgtgcattgcctccgctcatggcta
gagcgtcaacacacctgtcctacctgcagagcccttgttgtgccaactgaaaatgggaca
aatgtggcaggatcacgaccagatgtgcaacaaggccctggatcaagtgcggcaagtgca
tctcagggttcgcaagcaaacaccacgccaagtaataatgttagccagcaccaagctaga
atccaagctgctgcagcagcagcagcagtttatcagaagtcttatgtttatccttctgta
ccaacactagcgtggtctcctggatatgctccagttcctccctcctatagtacagtgggc
agttctgccaatgtgctctcagatggggaacgggcattgaatgaacaatcatcgcacaat
caattagcaaatatgccctttgctcaatatccacaatccggttttctcccttttcaatat
ccaggtgctaacaaccttggtattccaacgtctcaacttgaggcccataagatactttta
cagcaacaaattgaggttctgcaaacccagctcaagcttttagagcatccaaacatacaa
aaaaaagcagatgatttaggaatttctgatagtaagggaaaagcaattttgtcagagagt
tctcgaggacataccgaaggtgcagagatttga
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