Solanum lycopersicum (tomato): 101257307
Help
Entry
101257307 CDS
T02665
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101257307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101257307
03041 Spliceosome [BR:
sly03041
]
101257307
03009 Ribosome biogenesis [BR:
sly03009
]
101257307
03016 Transfer RNA biogenesis [BR:
sly03016
]
101257307
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101257307
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101257307
Spliceosome [BR:
sly03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101257307
Complex C
U4/U6.U5 tri-SnRNP related factors
101257307
Ribosome biogenesis [BR:
sly03009
]
Eukaryotic type
Pre-60S particles
Helicases
101257307
Transfer RNA biogenesis [BR:
sly03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101257307
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Zot
Motif
Other DBs
NCBI-GeneID:
101257307
NCBI-ProteinID:
XP_004230417
UniProt:
A0A3Q7F9S1
LinkDB
All DBs
Position
1:complement(87746885..87755093)
Genome browser
AA seq
991 aa
AA seq
DB search
MGSFKRKSQEFSNEDDIPPSKQLKQNDLLGADEPVTCLHDVSYPEGYVPSASTSGLPQQD
SKPAKEFPFPLDPFQSEAINCINNGESVMVSAHTSAGKTVVALYAIALSLKNNQRVVYTS
PIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREVAWV
IFDEVHYMRDRERGVVWEESIVMAPKNSNFVFLSATVPNAKEFADWVAKVHQQPCHIVYT
DYRPTPLQHYIFPSGGDGLYLVVDDKGKFREDSFQKALNALVPANEGDKKRENSKWQKGL
VVGKSGENSDIFKMVKMIIQRQYDPVICFSFSKRECEFLAMQMSKMDLNNDDEKVNIETI
FWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDDRGICILMVDEKL
EPSTAKFMLKGSADALNSAFHLSYNMLLNQIRSEDGHPENLLRNSFYQFQADRALPDLEK
QAKILEEERNSIVIEEEDSLERYYNLLEQYKSLKRDVRGIVFSPKYCLPFLQPGRLVCIE
CTKVDVDPNFSLSEEVTWGVIVNFERVKGISEDDANKKPEDANYTVDVLTRCIVQKDEVG
RKTIKVVRLKDAGEPAVVSLPLSQIDSLSSVRLVIPKDLLPSEVRENALKKVSEVLNRFS
KEGMPLLHPEDDMKVQSSSYRKASSRIEALESLFEEYEIAKSPLIKEKLKVLHKKKELTS
KIKSIKRTLRTSTVLAFKDELKARKRALRRLGYIKDDVVLQKGKVASEISSADELTLTEL
MLNGTFRNIKVEDMVSLLSCFVWQEKLQDAQKPREELGLLFAQLQDTAQQVAKVQLESKV
QIDVENFVSSFRPDIMEAVYAWAKGSKFYEIMEMTPVFEGSLIRAIRRLEEVLQQLIQAA
KSIGDIVLEAKFEEAVTKIKRDIVFAASLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgggttcttttaagaggaagtcgcaagaattctccaatgaggatgatattcctccaagt
aaacagctaaaacaaaatgatttacttggtgcagatgagccagtgacatgtctgcatgat
gtgtcatatccagaagggtatgttccctctgcttcaacttctggtttgcctcaacaagat
tcaaaacctgctaaagagttcccttttccactcgacccttttcaatctgaagcaatcaac
tgtattaataatggcgaatccgtcatggtatcagcacacacgtcagcgggaaagacagtt
gtggcattatatgcaattgccttgtcgttgaagaataaccagcgagtggtatatacttca
ccaattaaggctcttagtaatcagaagtatagagaattcaaagaggagttttcagatgtg
ggtttgatgactggagatgtcacaattgatccaaatgcttcttgcctggtaatgactaca
gaaatctggcgtagtatgcagtacaaaggatcagaggttacaagggaggtggcttgggtt
atatttgatgaggtacactacatgcgtgatagagaaagaggtgtagtttgggaggaaagc
attgttatggccccaaaaaattccaactttgtcttcctctcagccacggtgcccaatgct
aaagagtttgcggattgggttgcaaaggtccatcagcaaccatgtcacattgtttataca
gactatagacccacaccacttcagcattatatatttccttctggtggtgatgggttatac
ttggtggttgatgacaaagggaagtttcgtgaggatagttttcagaaagctttgaatgct
cttgttccagccaatgaaggggataaaaaaagagaaaatagcaagtggcagaagggtctg
gttgttggcaaatctggtgagaatagtgacatattcaagatggttaaaatgattatccag
cggcaatacgatcctgtaatatgcttcagcttcagcaaaagagaatgtgaatttctagca
atgcagatgtctaaaatggatttaaacaatgatgatgagaaggtgaatattgaaactatt
ttctggagtgccatggacatgttgtcggatgatgataaaaagctgcctcaggtttcaaat
atgctacctctattgaaacgtggaattggtgtgcatcattctggtttgctccctatattg
aaagaagtgattgaaatcctgttccaagaaggattcatcaagtgtttgtttgccacagag
actttcagtatagggttgaacatgcctgcaaaaactgttgtctttacaaatgtccgtaaa
tttgatggagacaagtttaggtggttatccagtggtgagtatattcagatgagtggtcgt
gctggccgtcgggggattgatgatcgtgggatctgcatccttatggttgatgagaaactt
gaaccttctacagctaaattcatgctaaaaggaagtgctgatgcattaaacagtgccttc
catttaagctataacatgcttttaaatcaaatacggtctgaagatggtcatcctgaaaat
ctgctgcgtaactcattttatcaatttcaagcagatcgtgcacttcctgatcttgagaaa
caagcaaagattcttgaagaggagagaaactcaattgtgattgaagaagaagacagcctt
gagagatattataatctgctagaacaatataagagcttgaagagggatgtacgtggcatt
gttttttctccaaaatattgcttacctttcctgcagcctggtaggcttgtatgcattgag
tgtacaaaggttgatgttgacccaaacttctccctcagtgaagaggtcacatggggagta
atagttaattttgaaagggtgaaagggatttctgaagatgatgcaaacaaaaaaccggag
gacgcgaactatacagtagatgtactcacgagatgtatagtgcagaaggatgaggttggt
agaaagacaattaaagtcgttcggttgaaggatgctggtgaaccagctgttgtctctctt
cctttgtcccagattgatagtttgagcagtgtccgtcttgtgataccaaaggatcttttg
ccttcggaagttcgagaaaatgcactaaagaaggtttctgaagttctcaatagattttca
aaagagggcatgcctctcttacacccagaagatgacatgaaggttcaaagtagctcgtac
aggaaggcttcgagtaggatagaggctcttgagagtctgtttgaagagtacgagatagca
aagtctccccttataaaagagaagcttaaggttttgcataagaagaaagaacttaccagc
aaaatcaaatcaatcaagagaacattgcgtacttcaactgtcttggctttcaaagatgaa
cttaaagcacggaaaagagctcttagaagacttggatacatcaaggatgatgttgtgttg
cagaaaggaaaagtagccagcgaaatcagcagtgcagatgagttgaccttgactgaattg
atgttgaatgggaccttcagaaatattaaagtggaggatatggtctctcttctctcttgt
tttgtttggcaagaaaagcttcaggatgctcaaaagccccgggaagagcttgggttgctc
tttgcacaattacaggatacagctcagcaagtggcaaaagttcagctcgagagcaaggtc
caaatagatgttgagaacttcgtgagttctttccgacctgatatcatggaggccgtctat
gcttgggctaaaggatctaagttttatgagattatggaaatgactccggtgtttgaaggc
agtttaatcagggctatcaggagattggaggaagttcttcagcagctaatacaagctgca
aaatccattggggatatcgtgcttgaggcaaaatttgaagaggctgttaccaagatcaag
agggatattgtctttgctgcatctctatatttgtag
DBGET
integrated database retrieval system
