Solanum lycopersicum (tomato): 101257490
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Entry
101257490 CDS
T02665
Name
(RefSeq) protein transport protein SEC16B homolog
KO
K20353
COPII coat assembly protein SEC16
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sly04131
]
101257490
Membrane trafficking [BR:
sly04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
101257490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
FimL_2nd
Motif
Other DBs
NCBI-GeneID:
101257490
NCBI-ProteinID:
XP_010324588
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All DBs
Position
8:2688893..2697350
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AA seq
1463 aa
AA seq
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MASNPPFLVEDQTDEDFFDKLVNDDDDDDVGFKVATSSTGLGAGAGASVSSVYDDGNESD
EVKAFADLSISDDVDSGVETGKKEGEKVDKSDDSNAKPGLVVEGNEEKSSGSLASLTAVR
SDGLLESSSGNLKTEVTDGKTENHASGSSNSGVKEVGWSAFHADPVTNDASGFGSYVDFF
SELGDKNGDATADVGENVNKGSILPAEQVHDKKQVHETEYLENTSSLTQGQDSYAHDATT
EQVADGQDLNSSQYWENLYPGWKYDTSTGQWYQIDNYESGANVQGSTDSSLVSDGTSEVL
YQQKTAQSVSGNAAESVTNWNQGLQVNGSTENVTNWIQASDNTSAVTDWNQVSLASDAGG
VTTDWNQASQLNNGYPSYMVFDPQYPDWYYDTVALEWRSLESYTSSAQSTVQGESQLDQN
GLASVQTSSYNNDQRDYGAYGHNDNSRFQGFSSSGGDYNWSGTLGNYNQYSSNMSQNENA
AKSNHMSEYSGNQQLENHYNQDFSASSHFNSQISNHYEGTVPYNAKAIQNQNDQRFLPGG
GFSHQFSQPTLQQHEQKHASNDYYGTQTTANYSQQAFQSSQQFGHAPTVGRSSAGRPSHA
LVSFGFGGKLIVMKDYSSSGNSSFGSQNPVGGSISLLSLMDVVSERVDSSSLAMGACDYT
RALCRQSFLGPLVGGSPSIKELNKWMDERISNSESPDMDYRKGEVLRLLLSLLKIACQYY
GKLRSPFGSEAVLKESDVPETAVAKLFASVKRNGMQFNQYGTVAQCLQQLPSEGQMRTTA
SEVQSLLVSGRKKEALQCAQEGQLWGPALVLAAQLGDQFYVETVKQMALQQLVAGSPLRT
LCLLIAGQPADVFSVESTSQSGMPGVNAVQQPAQFGANIMLDDWEENLAVITANRTKDDE
LVLIHLGDCLWKERSDIVAAHICYLVAEANFEQYSDTARLCLVGADHLKFPRTYASPEAI
QRTEIYEYSKVLGNSQFILPPFQPYKLVYAHMLAEVGRISDALKYCQALSKSLKTGRTPE
TETLRQLVSSLEERIKTHQQGGFSTNLAPAKLVGKLLNLFDSTAHRVVGGLPPPMPTNGS
SQGSEHQHQFAGPRVSSSQSTMAMSSLIPSSSVERISEWAADSGRMTMHNRSVSEPDIGR
TPRQVDSSKEASSSNTGSDASGAGGTSRFRRFSFGSQLLQKTVGLVLKPRQGRQAKLGDS
NKFYYDENLKRWVEEGAALPDAEPPLAPPPTAAAFQNGAPDYNVKNVLKSESSICNNGFP
EMKSPTSAADGAGIPPLPPTSNQFSARGRMGVRSRYVDTFNKGGGNPTNLFQSPSVPSIK
PATAGNAKFFVPAPMSPVEETGNSTSNEQETSSNSESDSVSAVNGPIHFPAPTSSAAPMQ
RFASMDNLSNKGAVASSLSANSRRTASWSGSLADAFSPNRSEIKPPGSRLSMPPSSFMPS
DANSMHSSTNGGSFSDDLQEVDL
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgaatcctccatttctagtggaggatcagacggatgaggatttttttgataaa
ttggttaatgatgatgatgatgatgatgttggttttaaggtagctacatcatcaacgggt
ttgggtgcgggtgcgggtgcgagtgtgagctcggtgtatgatgatggaaatgaatctgat
gaggttaaagcctttgctgatctcagtataagtgatgatgtcgatagtggagttgaaact
gggaagaaggaaggggagaaagtagataaaagtgatgatagcaatgccaaaccgggtttg
gtagttgaggggaatgaagagaagagtagtggttctttagcgtcattgactgctgtgagg
tcagatggattacttgagtccagcagtggtaatttgaagactgaggtaactgatggtaag
acggagaatcacgccagtggatcgagcaattcgggtgtgaaggaagttggatggagtgct
ttccatgctgatccagttacaaatgatgcttctgggttcggatcctacgtggactttttc
agtgaattgggtgataaaaacggtgatgcaacggcagatgttggtgagaatgtgaataaa
gggtcaattttgccagcggaacaggtccatgacaaaaaacaagttcatgaaacagaatat
ttggagaatactagttcgttaacacagggtcaggatagttacgcccatgatgctacaaca
gaacaagttgcagatggacaggatctaaatagtagtcagtattgggaaaatctttatcca
ggttggaagtatgacacaagtactgggcagtggtatcagattgataattatgaatcagga
gctaatgtacaaggaagtactgattctagtttggtttctgatggaacgtcagaggttttg
taccaacagaaaactgctcagtctgtttctggtaatgcagctgagagtgtcactaattgg
aatcagggtttgcaggtaaacggttctactgagaatgtgacaaactggatccaggctagt
gacaatacaagcgctgtgactgactggaatcaggtgtcactggctagtgatgcaggtggt
gtcacgactgactggaatcaagcctcacaacttaacaatgggtatccgtcatatatggtt
tttgatcctcagtaccctgattggtattatgatacagttgcacttgaatggcgctctctg
gagagctacacatcgtctgctcaatcaactgttcaaggtgagagccagctggatcagaat
ggtttggcttcagtgcagacttcctcttacaataatgatcaaagggattacggtgcatac
gggcacaatgacaatagtagatttcaagggtttagcagcagcggaggagattacaactgg
tctggcactttaggtaattacaatcagtatagctcaaatatgtcacaaaatgaaaatgct
gcaaagagtaaccatatgtctgaatatagtgggaaccagcaattagagaaccactacaac
caagatttttcggcaagcagtcattttaatagtcaaatatctaatcattatgagggaaca
gttccatacaatgcaaaagcaattcaaaatcaaaatgaccaacgttttctccctggtggg
ggtttcagtcatcaatttagtcagccaacactccagcaacatgagcagaagcatgcctca
aatgattattatgggactcaaactacagccaattattcccagcaagcatttcagagtagc
cagcagtttggtcatgctcccactgtaggaagatcatctgctggccgcccatcacatgct
ttggtttcttttggttttggtggaaaattgattgtgatgaaagattatagttcttctggc
aactcatcctttggaagtcagaatcctgtaggaggttcaatatctttgctcagtttgatg
gatgttgtctctgagagagttgacagttcaagtcttgcgatgggggcatgcgactatacc
cgagctctgtgccgacaatcattccttggtccactagttggtggtagtcccagtatcaag
gagttgaataaatggatggatgagaggatttcaaactctgaatctcctgacatggattac
aggaaaggcgaagttttgaggttgcttctgtcattgctaaaaatagcatgtcaatattat
gggaaactccgttctccttttggtagtgaggctgtgttgaaggaaagtgatgttccagaa
acagcggtagccaaattgtttgcttctgtgaagaggaacgggatgcaattcaatcaatat
ggcactgttgcccagtgcttgcagcaattgccttctgaaggacagatgcggactacggct
tctgaggttcaaagtcttctagtatctggaagaaagaaagaagcattacaatgtgcacaa
gaggggcagttgtggggaccagctcttgttcttgctgcacaacttggtgatcagttctat
gtagaaacggtgaagcaaatggcacttcaacagttagtagcagggtcacctttgcggaca
ctgtgcctactaattgcaggtcaaccggctgatgtcttttctgtagaatctacatctcaa
agtggcatgcctggtgtaaatgcggttcaacagcctgcacagtttggtgctaatatcatg
ctggatgactgggaagagaatttggctgttattactgcaaacagaacgaaggatgacgaa
ctggtgcttattcatcttggcgattgtttgtggaaagagaggagtgatattgttgctgca
cacatttgctatctggtggccgaagcaaactttgagcaatattcagatactgcaagattg
tgtcttgtgggtgcagatcacttgaaattcccacgaacttatgctagtccagaggctatt
cagaggacagagatttatgaatactcaaaggtgctggggaattctcaatttattctccct
ccttttcagccatataaacttgtgtacgcacacatgctagctgaagttgggaggatatca
gacgcattaaagtactgtcaagcattgtcgaaatcacttaaaactggccgaacccctgag
actgaaacactgagacagttagtgtcgtctcttgaggaaaggattaaaactcaccaacag
ggagggttctctacaaatttggctcctgcgaaattggttggtaaattactgaatcttttt
gatagcacggctcatcgtgttgttgggggcttaccaccaccaatgccaacaaatggcagt
tcccaagggagtgaacatcaacatcagtttgcagggcctagagtctcaagtagtcaatca
accatggcaatgtcatcactgatcccctcgtcatctgtggagcgaataagtgaatgggca
gctgatagcggtagaatgacaatgcacaatagaagtgtttcagagcctgacattggaaga
actccaagacaggttgactcatcaaaggaagcaagctcaagtaacacaggaagcgatgca
tcaggagctggcgggacatcacggtttcgtcgctttagctttggttcccagcttctccag
aaaactgttggattagtgctcaaaccccgtcaaggccgtcaggcaaaattgggtgattca
aataaattttattatgatgaaaaccttaaaagatgggtagaggaaggagcagcacttcct
gatgcggaaccaccccttgcacccccaccaaccgctgctgcttttcagaatggagcacca
gattataatgtgaagaatgtattaaaaagtgaaagttctatatgcaacaatgggtttccg
gaaatgaagagtccaacttctgctgctgatggtgcgggaatcccacctcttccgcctacc
tccaaccaattctcagctcgtggtcgtatgggtgtccggtcaaggtacgttgacacattc
aacaaaggtggtggtaacccaaccaatctattccagtcgccttctgtaccttccataaag
cctgctactgctggcaatgccaagttttttgtccctgcaccgatgtcccctgttgaagag
acaggaaacagtacttccaatgagcaagaaacttcaagtaatagtgagagtgattcagtt
tctgctgttaatggaccgatccatttccctgcaccaacctcaagcgctgcgcctatgcaa
aggtttgcaagcatggacaacctctccaataaaggagctgttgctagctctctatcagct
aactctcggcgaactgcatcatggagtggcagccttgctgatgctttttcccctaataga
tctgaaataaaaccaccgggctctagattgagtatgcctccgtcttcattcatgcccagt
gatgctaattcgatgcattcctcaacgaatggtggcagtttcagtgatgaccttcaagaa
gtagacctgtga
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