Solanum lycopersicum (tomato): 101258563
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Entry
101258563 CDS
T02665
Name
(RefSeq) protein RDM16-like isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101258563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
101258563
Spliceosome [BR:
sly03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
101258563
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
SabA_adhesion
Motif
Other DBs
NCBI-GeneID:
101258563
NCBI-ProteinID:
XP_010321975
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All DBs
Position
6:complement(29187979..29200945)
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AA seq
826 aa
AA seq
DB search
MAEKEKSSRDYRDKHRSSKDKHYEDDHRHHHHRSKHRSEDGHHRSEREGSRERSHYHDRK
EESLEKKHSHKRKDRAESVDRYNADDKRPRVSDKRRTEDDNGRDKRRDDDGDWRDKDEER
REKRRFEGKAKEEEDVEVDEERGGGGLQMPTSKKEPTDNVQDQAVGSIAKGETMGSYKVT
SRNLPGNYLAHGDSPATKVSLLSTTNENKGVNINGSHQIHGKSSTDGTVSGAGKSGSLSL
DALAKAKRALQMQKEWTQKAKKIPALNKNKGPNFTREGLPQVGPKESLQPSANAGIFPTP
VASSDAGVLLTPGSAPSASIPPSSGLPHLKGLTAQKYEAVKRAQELAAKMGFRQDPEFAP
LINMFPGQMPPEVTLQPKPAKAPVLRLDALGREIDEQGNIVNMLKPSSTLKVNINKKKQE
AFQILKPELEVDPEKNPYYDPGMGIDKNKILRPKKMTFQFVEEGKWSRDAEIIKLKSQFG
EARAKELKAKQAQLTKAKAEPDINPNLIEVSARVIAKEKQKEPIPDVEWWDAPLLRSGTY
GDVVDGNVMNEQLKIEKITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAR
EKERQEMIRQGLVEPPKPKVKMSNLMKVLGSEATQDPTKLEMEIRSAAAEREQAHVDRNI
ARKLTPDERREKKERKLFDDSNIAPETIVSVYKINDLSHPQTRFKVDVNAQENRLTGCAV
ISGGISVVVVEGGKKSIKRYGKLMLRRIDWAAAGKKVDDEGEGEGEDEDKPLNKCVLVWQ
GSVAKSSFHRFFVYDCRTEAAARKVFADAGVPHYWDLAVNFKDDEF
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaaagagaaatcgagcagggattacagagacaaacaccgcagttccaaggat
aagcactatgaagatgaccaccgtcatcatcaccatcgttccaagcatcggtcggaagac
ggacatcaccgatctgagagagagggaagccgagaaagatctcattatcatgataggaag
gaggaatcactggagaaaaaacattcgcataagaggaaagaccgagcagaaagtgttgat
agatacaatgcggatgacaagagacctagagtttctgacaagaggaggaccgaggacgac
aatggtagggataagcggagagatgatgatggagattggagggataaggatgaggagaga
agagagaaaaggaggtttgagggtaaagcaaaggaggaggaggatgttgaagttgatgaa
gaaagggggggaggtggattgcaaatgccaacttctaagaaagagccaactgataatgtc
caggatcaggctgttggttccattgctaagggtgagacaatgggatcatacaaggtgaca
tcaaggaatttgcctggtaactacttggctcatggtgattctccagctaccaaggtatct
ttgctttctaccacaaatgaaaataagggagttaatattaacggatctcatcagattcat
gggaaatctagtacagatgggacagtttccggtgctggcaagagtgggagcttatccctt
gatgctttagcaaaagcaaagagagctttacaaatgcaaaaggagtggactcaaaaggcc
aagaagatacctgcattaaacaagaacaagggtcccaactttactagagagggacttcca
caggtgggacccaaggagagccttcaaccttcggctaatgcagggatttttcctactcca
gttgcatcttcagatgcaggggtattgctaactcctggttcagcaccaagtgcatccatt
ccaccgtccagtggtttgcctcatcttaaggggctcacagctcaaaaatatgaagcagta
aagcgtgcacaggagcttgctgctaagatgggattccgacaggacccagaatttgctccc
ctcataaacatgtttccggggcaaatgccaccagaggttacccttcagccgaagcctgca
aaagcccctgttcttcgattggatgcccttggtagggaaatcgatgagcagggaaatatt
gtcaatatgcttaagccatctagcacgcttaaggtgaacatcaataaaaagaaacaagaa
gcatttcaaattctcaaacctgaacttgaggttgatcctgagaaaaatccgtattatgat
ccaggcatgggaattgacaagaacaaaattttgaggcccaagaaaatgacttttcagttt
gtggaggaaggcaaatggtcaagagatgcagagataatcaagttaaagagccaatttggt
gaagcacgagctaaagagctaaaggcaaagcaagcacagttgaccaaggctaaagcagag
cctgacataaatccgaatctcattgaggtatctgcaagggttatcgccaaggaaaaacag
aaggaacctattcctgacgttgagtggtgggatgctcctctgttacgatctggtacttat
ggtgatgttgttgatggtaatgtaatgaacgaacagttgaagattgaaaagatcaccata
tatgttgaacatcctcgccctattgagccacctgctgaaccagctccacctcctccccaa
ccattgaaactaaccaaaaaggagcaaaagaaacttcgaactcagcgaagattggccaga
gagaaagaaagacaagaaatgatacgacaaggcctggtggaaccaccaaagccgaaagtt
aaaatgagcaatctaatgaaagttcttggctcagaagccacacaggatcctacaaagctt
gaaatggagatcagaagtgcggctgctgagcgtgagcaggctcatgtagacaggaatatt
gctcgtaagcttacccctgatgagcgtcgagagaagaaagagaggaaactttttgatgac
tcaaatatcgcaccggagactattgtttcagtatacaaaattaatgacctctcccaccca
caaacgcgcttcaaggtggatgttaacgctcaggagaatcgtttgactgggtgtgcagtg
atctcaggaggtattagtgttgttgttgttgaaggtgggaaaaaatcaatcaagcgatat
gggaaacttatgcttagaagaattgattgggcagctgctggtaagaaagtagatgatgaa
ggtgaaggtgaaggtgaagatgaagataagcctctcaacaagtgtgtgttggtctggcaa
gggagtgttgctaaatcaagcttccataggttttttgtttatgactgcaggacagaggct
gctgctcgtaaagtttttgctgatgctggggttccccattattgggatcttgctgttaac
tttaaagatgacgaattttaa
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