Solanum lycopersicum (tomato): 101258585
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Entry
101258585 CDS
T02665
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X3
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101258585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
101258585
03009 Ribosome biogenesis [BR:
sly03009
]
101258585
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101258585
Spliceosome [BR:
sly03041
]
Complex A
U1 snRNP components
U1 related factors
101258585
Complex B
101258585
Ribosome biogenesis [BR:
sly03009
]
Eukaryotic type
Pre-60S particles
Helicases
101258585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_22
DUF4761
CREG_beta-barrel
Motif
Other DBs
NCBI-GeneID:
101258585
NCBI-ProteinID:
XP_004246279
UniProt:
A0A3Q7HZ81
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All DBs
Position
9:11945424..11963525
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AA seq
558 aa
AA seq
DB search
MSYVPPHLRNSAAGKTTTTPTINSIGADHFSSKHTSRISSLEKSSNGYSSSARRSSLNYS
LPNTFAVPDPIFPHWKPSERVLRLKSEQIEEIRLRLNVDVNVSPVSCPAPSPIESFPDMC
LHASIMKDIEKHGYTAPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFSIPMIQHCLAQQ
PLQRGDGPLALVLAPTRELAQQIEKEVTAFSMSLDSFKTAIVVGGTNISEQRSELRAGVH
IVVATPGRLIDHLQQGNTSLGRIAFVVLDEADRMLDMGFEPQIREVMRNLPVKHQTLLFS
ATMPAEIEALAQDYLTNPVRIKVGKVSSPTANVSQTLEKVPENDKIDRLLDLLVEEAAQA
EKSGHPFPLTIVFVERKTKCDEVAEALTQQGLLATALHGGRSQNEREAALRDFRHGPINI
LVSTDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGRATSFYTDRDMYLVA
QIRRAIADIGSGNDVTIAMGKTARRKEREAAAAEKEARSELSKFSLVGSTVNVEDKYRHM
IAPSMIKKEGAADDAWDD
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatgtacctcctcacctgagaaattctgctgccggaaaaaccactaccacccct
actataaacagtataggcgccgatcacttctcttccaaacacacatccagaatttcttct
ctcgaaaagtcttccaacggttactccagttcagctcgccggagttccctcaattactcc
ttgcccaacacttttgctgtccctgaccccatctttcctcactggaagccttccgaacgt
gttcttcgtcttaaatccgagcagatagaagagattcgactgcggcttaatgtagatgtc
aatgtttctccagtctcatgtcctgcaccctcacctattgagtcatttcctgatatgtgc
ttgcatgcaagtataatgaaggatattgaaaagcatggctacactgcaccgacttctatt
caggctcaagccatgcctgttgctcttagtggcagggatctcttggggtgtgcagaaact
ggtagtgggaagactgctgcattcagcatacctatgatacagcattgcctagctcaacaa
cctcttcaacgtggtgatggacctttggcattagtgttggcacctacaagagagcttgca
caacaaatagagaaagaggttacggctttcagcatgtctttggattcctttaagaccgca
attgttgtaggtgggacaaacattagtgagcagaggtctgagcttcgagcaggagtacat
atagttgttgctactccgggaagacttatagatcatttacaacaaggaaatacttccctc
ggtaggattgcttttgtagttttggatgaggctgatagaatgcttgacatggggtttgaa
cctcagataagagaggtgatgcgaaatcttccggtaaaacatcaaacactgctcttcagt
gccaccatgccagcagaaattgaagcattggcacaggattacttgactaatcctgtgcga
ataaaagttggaaaagtaagcagcccgacagcaaatgtttcccaaactttagagaaggta
cccgaaaatgataagattgatcgccttctggatttgctggttgaggaggctgctcaagct
gaaaaatctggccatcctttccctttgaccattgtatttgtggaacggaagacaaaatgt
gatgaagtagcagaagctttaacgcagcagggtttgcttgcaactgcacttcatggtggt
cgtagccaaaatgaaagagaggctgcccttcgtgatttcagacatggacctatcaatatc
ttggtttctactgatgttgcgtctagggggttggatgtcactggagttgcacatgtaatt
aacctagatcttccaaagaccatggaagattatgtacaccggattggaaggactggtcgt
gcagggtcaacgggccgagctacttcattctacactgatcgtgatatgtatcttgtggct
caaataagaagagcaatagctgatattggttctggcaatgatgtaaccattgctatggga
aagactgcaagaagaaaggagagagaagctgcagctgcggaaaaagaagcaaggagtgaa
ttgtctaaattctctttagtagggtccacggtaaatgtggaggataagtataggcacatg
attgccccatcgatgattaaaaaggagggagctgcagatgacgcttgggatgactga
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