Solanum lycopersicum (tomato): 101258662
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Entry
101258662 CDS
T02665
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101258662
03036 Chromosome and associated proteins [BR:
sly03036
]
101258662
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
101258662
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
101258662
Chromosome and associated proteins [BR:
sly03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
101258662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_22
DEAD
SLFN-g3_helicase
AAA_16
Helicase_RecD
PIF1
ATPase_2
Mov-10_helical
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
101258662
NCBI-ProteinID:
XP_004241042
UniProt:
A0A3Q7GWM0
LinkDB
All DBs
Position
6:39473671..39480494
Genome browser
AA seq
956 aa
AA seq
DB search
MGTISYKSDDEYSTITDKGDIGFVDFDKYKSAGSYNPNEESDIVVISVPFPLVAGKPKSG
FVGETVVDSVTIENTTNETQELWSIKIYNSKPEDSFTLSLMKPPTDSSDLQYVEEFMESF
SLEDRMLRPGQTLTVWLTCKPKEIGLHTSAVHFNVGDDTIERLVFVLAEDKVSQSLASRR
PFHRDRKKKVPAVDVFAANAFVVGSRPTRAPNRGFRYRLPSYPIPGDIREMIENKQFPDV
IGEGLRRDNYIAYFRTLLAIEEIKMEEDMRDYDMLSVTMKRKGLQFLSLDVPGLAERRPS
LVYGDFIFARLASGDASEITPYQGYIHRVEAEEVYLKFDEEFHINHVPGNLYNVQFSFNR
TGVRRLHQAIEATESLNGEILFPSGISRTRNIQAARLAPNSCMLNKEQTTAVEKILGCKG
GAPYVIHGPPGTGKTRTLIEAIIQVRIMRKDARVLVCAPSNSAADHILEKLVSQQNVEVQ
DNEILRLNALTRPLDDVNPSYLRFCNAEDNSFKCPLLRDLKRYTVIISTYASACLLYSEG
IKRGHFSHIFLDEAGQASEPDTMVPLSHLLKKETVVVLAGDPQQLGPIVFSKDAENYGLA
TSYMERLFECQLYGDLNENYATRLVRNYRCHPVILQLPSEMFYEGELIPCKEDKTFTQTW
VDLLPNKEFPLVFIGIQGCDEREGSNPSWFNRIEASKVVEIIRDLIGNKGLKEEDIGVIT
PYRQQVLKIRTALESFEWANIKVGSVEQFQGQEREVIIISTVRSTIQHNDFDRIHYLGFL
SNPRRFNVAATRARSLLVVVGNPHIICKDPFWNKLLWYCADNDSYKGCFLPEKLEIPQED
FGQANNWFQEYSGQANNWDDVGAQVNNWDCEGAEANDWDQDQVGKVNNWDQDQGGQVNNW
DQDEGELAKNWNEEGTCVNEEKQSFQPSPDVEGTTHQTDYIPDPVMDEAEWSDGWK
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgggcacaatttcttataagtcggatgatgaatactcaactattactgacaaaggagac
atcggatttgtcgactttgacaaatataaatcagctggtagctacaatccaaatgaagag
agtgatatagttgttatatctgttccatttccgctggtagcaggaaaacctaaatcagga
tttgttggggaaactgttgttgattcagtcacaatagagaataccaccaatgaaacccag
gagctgtggtcaattaagatctataactcaaaacctgaggattcattcactctttctctg
atgaaacctccaactgatagttctgatttgcaatatgttgaagaattcatggaatccttt
agcttagaggatagaatgttacggccaggtcaaacacttacagtatggctgacttgtaaa
cccaaagaaattggattgcacacatcagctgtgcatttcaatgtgggtgatgacaccata
gaaagattagtttttgtcttggctgaggataaggtttcccagtctctggcttcaaggagg
ccgttccacagagacagaaagaagaaagtaccagcagtagatgtttttgctgcaaatgca
tttgttgtgggttcccgtcctacaagggctccaaatcgaggtttcagatacagacttcct
tcatatccaattccaggtgatatacgggaaatgatagagaacaaacaatttcctgatgtt
attggggaaggtttaagaagagacaattatattgcttattttagaactttactagcaatt
gaagaaatcaagatggaggaagacatgagggactatgatatgttgtcagtcaccatgaag
cgcaaaggactacagttcttgtcccttgatgtcccagggctagccgagaggaggccatca
cttgtttatggagattttatctttgcaaggctagcttctggagatgctagtgagatcacc
ccttaccagggttatatccaccgagttgaggcggaagaagtatatttgaagtttgatgaa
gaattccacatcaaccatgttcctggaaatctgtacaatgtgcaattttcattcaatcgt
acgggtgtgcggaggttacatcaagccattgaagctacagaaagcttaaatggagaaatt
ctctttccatcaggcatatccagaacgagaaatatacaagctgctagactggcacctaat
tcatgtatgcttaacaaggaacaaacaactgcagttgaaaagattcttgggtgcaaagga
ggggctccatatgttatccatgggcctcctggtacaggcaaaacaaggactcttatagaa
gctatcatccaggtacgtattatgaggaaagatgctcgagttcttgtctgtgcaccttca
aatagtgctgcagaccatatacttgagaaacttgtcagtcagcagaatgttgaagtgcag
gacaatgagattcttaggttgaatgcactcacacgtcctttagatgatgtgaatcctagt
taccttcgtttttgcaatgctgaagataattcttttaagtgcccccttctcagggacctt
aaaagatatacggttattatatctacatatgctagtgcatgtcttctttattcagagggc
atcaaacggggacacttctctcatattttcttggatgaggcaggacaggcatcagagcct
gataccatggttcctctatcacatcttttaaagaaagagacagtcgttgtacttgctggt
gacccacagcaacttggtcccattgttttctcaaaagatgctgaaaattatggattggca
acttcatatatggagaggttatttgaatgccagttatatggtgatctcaacgaaaattat
gctaccagactagtaaggaattatcggtgtcatccggtaattctgcagcttccctcagaa
atgttttatgaaggagagttgatcccatgtaaagaagataaaacttttacccagacttgg
gtggacctgcttccaaacaaggaatttccgttggttttcattggcatacagggttgtgat
gaaagagaaggaagcaacccatcatggttcaacaggatcgaagcaagcaaggtggtagag
atcatcagagatctgatagggaacaaaggtctgaaagaggaagatattggggtgataaca
ccttataggcagcaagtactgaaaataagaacagcccttgagagctttgagtgggctaat
ataaaggttggcagcgtagagcaattccaaggtcaggagagagaagttattatcatatcg
accgtccggtcgacgattcagcataatgacttcgacagaatccattacttaggattctta
agcaatccgagaaggttcaatgttgctgctacaagagccagatcattgcttgtagttgtc
gggaatccacacatcatctgcaaggatcccttctggaacaagcttttgtggtattgtgca
gacaatgactcctacaagggctgcttcttacctgaaaaactggagatccctcaagaggat
ttcggacaagcaaataattggtttcaagagtattccggacaagcaaataattgggatgat
gttggggcacaagtaaataactgggactgtgaaggagcagaagctaatgattgggaccaa
gaccaggtgggaaaagttaacaattgggaccaagaccaaggcggacaagtcaacaattgg
gaccaagatgaaggggaactagctaagaattggaatgaggaaggcacttgcgtcaatgaa
gagaaacagagttttcagccatctcctgatgttgagggtacaacgcaccaaacagactac
atcccggaccctgttatggatgaagctgaatggtctgatggttggaaataa
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