Solanum lycopersicum (tomato): 101258664
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Entry
101258664 CDS
T02665
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101258664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101258664
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101258664
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101258664
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
101258664
NCBI-ProteinID:
XP_004241682
LinkDB
All DBs
Position
6:complement(44828847..44830426)
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AA seq
274 aa
AA seq
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MSLLPKSDSIHIREVWSDNLEEEFDLIREVVDDYPFIAMDTEFPGVVLRPVGNFKNSNDY
HYQTLKDNVDLLKLIQLGLTFSDEDGNLPKCGTDKYCIWQFNFCDFNPNEDVYANDSIEL
LRQSGIDFKKNIENGIDAKRFGEILMSSGIVLNDNVYWVTFHSGYDFGYLLKILTCQDLP
ETQEGFFNLINMYFPVLYDVKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTA
CTFRKLKENFFIGSLEKYAGVLYGLGVVENGVLH
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcttttgcctaaaagcgactcgattcacattcgagaagtttggagtgataatctg
gaagaagagtttgatttgattcgagaagtcgttgatgattatccgtttatagctatggat
acggagtttcctggagttgttcttcgtccggttgggaattttaagaatagtaatgattat
cattatcagaccttgaaggataacgtagatttgttgaagttgattcagttgggtttaacg
ttttctgatgaagatgggaatttgcccaagtgtggaactgataagtactgcatttggcag
tttaatttctgtgattttaatccgaatgaggatgtttatgctaacgactcgattgagttg
ttgaggcaaagtggtattgatttcaagaagaacatagaaaatgggattgatgctaaacgg
ttcggtgagattttgatgtcttcagggattgtgttgaatgataatgtgtattgggttaca
tttcatagtggttatgattttggttacttgttgaagatcttgacatgccaggatttgcct
gaaactcaagaaggtttcttcaatctgatcaacatgtacttccctgtgctttatgatgtt
aagcatttgatgaagttctgcaacagtcttcatggtggactgaacaagcttgcggagttg
ttggaagttgagagagttggtgtctgccatcaggccggttcggatagcttgctcacagct
tgtacttttaggaagttgaaagagaatttctttattggctcacttgagaagtatgccggt
gtcttgtatggtttaggtgttgtggagaatggagtcctccattga
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