KEGG   Solanum lycopersicum (tomato): 101259073
Entry
101259073         CDS       T02665                                 
Name
(RefSeq) putative tRNA pseudouridine synthase isoform X2
  KO
K06173  tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
Organism
sly  Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:sly00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sly03016]
    101259073
Enzymes [BR:sly01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.12  tRNA pseudouridine38-40 synthase
     101259073
Transfer RNA biogenesis [BR:sly03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    101259073
 Prokaryotic type
    101259073
SSDB
Motif
Pfam: PseudoU_synth_1
Other DBs
NCBI-GeneID: 101259073
NCBI-ProteinID: XP_004247032
LinkDB
Position
9:complement(44860394..44875086)
AA seq 496 aa
MAGLCVRLPQIPLTNLRFLRSRTLKIVLCSSTSSVESNKWEPFIKKKVVMRVGYVGSDYR
GLQMQRDEHQLSTIEGELEKAIFKAGGIRESNFGNLYKIGWARSSRTDKGVHSLATMISL
KMEIPADAWEDDPNGITLANCVNSSLPENIRVFSILPSKKRFDARRECNARKYSYLIPAE
IIGIKNDSASSEIEYHIANFNDILNSFEGEHPFHNYTIRSKYRKQSPARNLLKNDSLLKK
GRPSSEEEISGSEEIDGEQNRKEQGVVTIVEAENQNAEGNCNLKVSHSKDLNSVIPIQAR
WLHEPDARDKLSSAHFRRIFHCHCGKLEKLLGMNYVEVSICGESFMLHQIRKMVGTAVAI
KRNLLPHDTLRMSLCKFSRIVLPLAPSEVLVLKGNNFALRNHPGNIIRPEMLTLLESDDI
LKAVDDFYYSTLLPQLSRFLDPSKSPWSEWVEILDANTSIPDYQLEEVRVAWKLWKAQYD
SRTKFPSVLAQESGVV
NT seq 1491 nt   +upstreamnt  +downstreamnt
atggcaggactttgtgtgcggcttcctcaaatccctctcacaaatctgagatttttacgc
tcacgcaccctaaagatagtgctgtgctcttcgacatcatctgtggaaagcaataaatgg
gaacctttcatcaaaaagaaagttgtgatgcgcgtgggatacgtgggttctgattatcga
ggtttgcaaatgcaaagagatgaacatcaactgtccaccattgaaggtgaactggaaaaa
gctatcttcaaagctggtggtattcgagaaagtaattttggaaatttatataaaattggc
tgggcgagaagtagtcgaaccgataaaggagttcattccttggcgacaatgatatctctt
aaaatggagattcctgcagatgcatgggaggatgatccaaatgggatcactcttgctaat
tgcgtgaactcgagtcttccagaaaatatcagagttttcagtattctaccctcaaaaaag
aggtttgatgccagaagagagtgtaatgcacgcaagtattcttatctcattcctgctgaa
atcatcgggattaagaatgattctgcttcttctgaaatcgagtaccatatagccaatttt
aatgacatactaaattctttcgagggagaacatcctttccacaattacacaatacgatcc
aagtacagaaaacaatctcctgccagaaacttgttaaaaaatgacagtctcttaaaaaaa
gggaggccctccagtgaggaagaaatatctgggtctgaggaaattgatggagaacaaaac
cgtaaagagcagggggttgtgacgattgttgaggctgaaaatcaaaatgcagaaggcaac
tgtaatttgaaagttagtcattcaaaggatcttaattctgttataccaattcaagcaaga
tggctccatgaacccgatgcaagagataaacttagctctgctcatttcagaaggattttt
cactgtcattgtggaaaattggagaagttgctcggcatgaattatgttgaagtttccatc
tgtggagagtcattcatgttacatcaaatacgcaaaatggtagggacagcagttgcgata
aaacgcaatcttctaccacatgatactttgagaatgtcgttatgcaagttttcaaggatt
gtgttacccctagccccatcagaagttttggttttgaaggggaacaattttgctttgaga
aaccatccaggcaacataataagacctgaaatgttgacattgttggaatcagacgatatt
ctcaaagcagttgatgacttctactactctacattgttacctcagctttctagattttta
gacccttcaaagtccccttggagtgagtgggtagaaatactggatgcaaacacaagcatt
ccagattatcaattagaagaagtaagggttgcttggaaattgtggaaggcacagtatgat
agcagaactaagtttccatcagtattggctcaagagtctggtgtcgtatga

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