Solanum lycopersicum (tomato): 101259073
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Entry
101259073 CDS
T02665
Name
(RefSeq) putative tRNA pseudouridine synthase isoform X2
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sly03016
]
101259073
Enzymes [BR:
sly01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
101259073
Transfer RNA biogenesis [BR:
sly03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
101259073
Prokaryotic type
101259073
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
101259073
NCBI-ProteinID:
XP_004247032
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All DBs
Position
9:complement(44860394..44875086)
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AA seq
496 aa
AA seq
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MAGLCVRLPQIPLTNLRFLRSRTLKIVLCSSTSSVESNKWEPFIKKKVVMRVGYVGSDYR
GLQMQRDEHQLSTIEGELEKAIFKAGGIRESNFGNLYKIGWARSSRTDKGVHSLATMISL
KMEIPADAWEDDPNGITLANCVNSSLPENIRVFSILPSKKRFDARRECNARKYSYLIPAE
IIGIKNDSASSEIEYHIANFNDILNSFEGEHPFHNYTIRSKYRKQSPARNLLKNDSLLKK
GRPSSEEEISGSEEIDGEQNRKEQGVVTIVEAENQNAEGNCNLKVSHSKDLNSVIPIQAR
WLHEPDARDKLSSAHFRRIFHCHCGKLEKLLGMNYVEVSICGESFMLHQIRKMVGTAVAI
KRNLLPHDTLRMSLCKFSRIVLPLAPSEVLVLKGNNFALRNHPGNIIRPEMLTLLESDDI
LKAVDDFYYSTLLPQLSRFLDPSKSPWSEWVEILDANTSIPDYQLEEVRVAWKLWKAQYD
SRTKFPSVLAQESGVV
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggcaggactttgtgtgcggcttcctcaaatccctctcacaaatctgagatttttacgc
tcacgcaccctaaagatagtgctgtgctcttcgacatcatctgtggaaagcaataaatgg
gaacctttcatcaaaaagaaagttgtgatgcgcgtgggatacgtgggttctgattatcga
ggtttgcaaatgcaaagagatgaacatcaactgtccaccattgaaggtgaactggaaaaa
gctatcttcaaagctggtggtattcgagaaagtaattttggaaatttatataaaattggc
tgggcgagaagtagtcgaaccgataaaggagttcattccttggcgacaatgatatctctt
aaaatggagattcctgcagatgcatgggaggatgatccaaatgggatcactcttgctaat
tgcgtgaactcgagtcttccagaaaatatcagagttttcagtattctaccctcaaaaaag
aggtttgatgccagaagagagtgtaatgcacgcaagtattcttatctcattcctgctgaa
atcatcgggattaagaatgattctgcttcttctgaaatcgagtaccatatagccaatttt
aatgacatactaaattctttcgagggagaacatcctttccacaattacacaatacgatcc
aagtacagaaaacaatctcctgccagaaacttgttaaaaaatgacagtctcttaaaaaaa
gggaggccctccagtgaggaagaaatatctgggtctgaggaaattgatggagaacaaaac
cgtaaagagcagggggttgtgacgattgttgaggctgaaaatcaaaatgcagaaggcaac
tgtaatttgaaagttagtcattcaaaggatcttaattctgttataccaattcaagcaaga
tggctccatgaacccgatgcaagagataaacttagctctgctcatttcagaaggattttt
cactgtcattgtggaaaattggagaagttgctcggcatgaattatgttgaagtttccatc
tgtggagagtcattcatgttacatcaaatacgcaaaatggtagggacagcagttgcgata
aaacgcaatcttctaccacatgatactttgagaatgtcgttatgcaagttttcaaggatt
gtgttacccctagccccatcagaagttttggttttgaaggggaacaattttgctttgaga
aaccatccaggcaacataataagacctgaaatgttgacattgttggaatcagacgatatt
ctcaaagcagttgatgacttctactactctacattgttacctcagctttctagattttta
gacccttcaaagtccccttggagtgagtgggtagaaatactggatgcaaacacaagcatt
ccagattatcaattagaagaagtaagggttgcttggaaattgtggaaggcacagtatgat
agcagaactaagtttccatcagtattggctcaagagtctggtgtcgtatga
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