Solanum lycopersicum (tomato): 101259106
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Entry
101259106 CDS
T02665
Symbol
RGL
Name
(RefSeq) rhamnogalacturonan lyase isoform 1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
101259106 (RGL)
Enzymes [BR:
sly01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
101259106 (RGL)
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
CarbopepD_reg_2
EMC7_beta-sandw
Motif
Other DBs
NCBI-GeneID:
101259106
NCBI-ProteinID:
NP_001352575
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All DBs
Position
11:4923103..4931076
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AA seq
677 aa
AA seq
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MRLEETKKQKIHKENMGKNMQLISLLYVVEFTMVAFTLLVVDGQRLIESPIVRLDIQTNQ
VTMSNGIVNVTLSTPYGFVTSISYGGVNNLLATQNVEKDRGYWDIFWNRTTSKRARKKFL
ENNFEVIMDTENQAEISFKSTWNASQSDELPLNSDLRFVMLRDTPGFYTYAIVERLEGWP
LVYIENLRVVFKLQQDMFHYMAISDERQRIMPMPVDRETGKVLDYKEAVLLTNPTNPNLK
GEVDDKYFYASDNKDDRVHGWVSSTNPPVGFWMIIPNDEFRTGGPYKQDLTSHVGPTVLS
IFVSRHFAGDDLVIKFQQGEPWKKVIGPVFLYLNSNSSAMDNPIILWEDAKRRMNQEVAS
WPYDFPVSEEYIKSNQRGMVRGQLLINDSSMTLVSASNGYIGLAPPGDVGSWQRENKGYQ
FWTKTDAMGNFTIENVISGTYNLYATVPGIMGDYKYTFDVQVTPGSSIDLGSLVYNPPRN
GATLWEIGVPDRTAAEFFVPAPPPEYNVHVYQNNVESIFRQYGLWEQYSILYPENDLVYN
VGTSNYSKDWFFAHVTRNIGNKTYISTTWKIIFDLEIVDNASNYTLQIALAAAQGAKLQV
RFNDEKVVEPHFTTGKIGGDNAIARHGIHGLYFLYSIEVKGNLLVNGTNTIFLTQTIATN
PFQGVMYDYLRLEGPHQ
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgagactagaagaaacaaagaaacaaaaaatccacaaagagaacatggggaagaatatg
caacttataagcttattatatgttgtggagtttaccatggttgcttttacattgttggta
gttgatgggcaaagattgatagaatcgccgattgttagattggatatacaaactaaccaa
gtgacgatgagcaatggcattgtaaatgttacattatcaacaccatatggttttgttacg
agcatatcatatggtggagtcaacaacttactcgcgactcaaaatgttgaaaaagataga
gggtattgggatattttttggaatcgtacaacgtctaaaagagctcgaaaaaagttcttg
gaaaataatttcgaggtcattatggataccgaaaaccaggcagaaatatcgtttaaaagt
acatggaatgcttctcaatctgatgaacttccattaaacagtgacttaaggtttgtgatg
ttacgagacacacctggattttatacgtatgctatcgttgaacgtttagaaggatggccc
cttgtatatatcgaaaatttaagagttgtgttcaagcttcaacaggacatgtttcattac
atggctatctcggacgagaggcagaggatcatgccaatgccagtggatcgagagacggga
aaggtacttgactacaaagaagctgttcttttgacaaatccaactaacccaaacctaaaa
ggagaggtggatgacaaatacttttatgcaagtgataacaaagacgatagagttcatgga
tgggtaagttctactaatcctccagtaggattttggatgataattcctaatgatgaattt
cgtactggaggaccttacaaacaagacctcacttcacatgttggtccaactgtactatct
atatttgtaagtagacattttgctggagatgatcttgttatcaaatttcaacaaggagag
ccatggaaaaaagttattggccctgtatttctctatcttaactcaaattcttctgctatg
gacaatcccatcatactctgggaagatgctaagagaaggatgaatcaagaagttgcaagc
tggccttatgattttccagtttcagaagagtacatcaaatctaatcaaaggggaatggtt
agaggccagcttcttattaacgacagctctatgactttagtatccgcatccaacggttat
atagggttagcaccaccaggagatgttggatcttggcaaagagaaaacaaaggttatcaa
ttttggactaaaacagacgctatggggaatttcaccatagaaaatgtcatatctggtaca
tataatttgtatgcaaccgttccaggaattatgggggattacaaatacacttttgatgta
caagttactccaggttctagtattgatttagggagtttggtttataatcctcctagaaat
ggagctacactttgggaaatcggtgtaccagatcgaacagctgctgagtttttcgttcca
gcgccacctccagaatataacgtgcacgtataccaaaacaatgttgaatcaatatttaga
caatatggtttgtgggaacaatatagtattttgtatcctgaaaatgatcttgtctacaat
gttgggactagcaattactcaaaagattggttttttgctcatgttactaggaatatagga
aacaagacctatatatctaccacatggaaaattatatttgaccttgaaattgttgacaat
gcatcaaattacactctccaaatagctcttgcagcagctcaaggagctaaattacaagtt
cgtttcaacgatgaaaaagttgtagaacctcattttacgacaggaaaaatagggggagat
aatgcaatcgcgagacatggtattcatggattatattttctttatagtatcgaagtaaag
ggcaatctacttgtaaatggaacaaacacaatttttcttacacaaacaatagctactaac
ccttttcaaggagtaatgtatgattatcttcgtttagaaggacctcatcagtga
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