Solanum lycopersicum (tomato): 101259220
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Entry
101259220 CDS
T02665
Name
(RefSeq) sister chromatid cohesion protein SCC2 isoform X2
KO
K06672
cohesin loading factor subunit SCC2
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sly03036
]
101259220
Chromosome and associated proteins [BR:
sly03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
101259220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
Cnd1
PHD
PDS5
zf-HC5HC2H_2
PHD_2
zf-PHD-like
IFRD
C1_1
Motif
Other DBs
NCBI-GeneID:
101259220
NCBI-ProteinID:
XP_010317890
LinkDB
All DBs
Position
3:27607463..27631910
Genome browser
AA seq
1782 aa
AA seq
DB search
MANSSGSSGVPHGISLSNTVHSEIAPSLPLPSLPVFCGALDHQLRLFDERSESRSLNRSD
ILIHANKIADLLHNTDVSYLNLRADASSQSHGFVGHLDLLNEVLTCNSEAFALINAGPIK
ETARSRNANSNSLESVPAVQLPQQGTVEIHNYQHDHAISDLTASSRKPKVKKKGRESTLL
SSGPDASECQDAVAAGFCEMLEDFCGRAEIFSDEREEREFLAVSVADLKVVLREITSIRA
KKALNSIPVDNLLRFLRVLDHQIHRAEGLSINDSEHMDAEVVSSIFCALESIHAALAIMA
YNGMPKQLYKEEIIERIVEFSRHQVMDVIFGSDPVYRALHKPPERGIPEGEEDGEVNGDF
VSPNRKKRSTRSAKPRKSTSNKVSSAVGNILQKLDVILGFLKELCTIEHLPDSCIIQLIK
TCFTTFVVENIQLLQMKSISLISGIFYAYTQHRASIMDEALLILLKLPSSKRMPRTYPLP
DEEQRQIQFITALLIQIVHSSSNLPDVLRESSDSPSLEVSVDASYPTKSCESVTEACCLF
WSRVLQRLTNTKNQEAAELKTMIENLVIDLLTTLNLPEYPASAPLLEVLCVLLLQNAGLK
SKDISVRSMAIDLLGTIAARLKQDAVRCREEKFWIVKELRSGEMIDRNPPKDACSVCSDT
RIEKSLVQCHGCQRLFHLNCTGIRGHDIPNRGFHCQMCISKKQLLVLKSLCESQSNDAGQ
NNRTNSGKMSQVAEAITNLEIVQQLLLNYLRDAATVDDLHLFTRWFYLCLWYKDDPNSEQ
KFMYYVARLKSQAIVRDSGSLSSLMTRESAKKITLALGQNSSFSRGFDKILQVLLASLRE
NSPIIRAKALRAVSIIVEADPEVLGDKLVQTAVEGRFCDSAISAREAALELVGRHIASYP
DVGLKYFEKLAERIKDTGVSVRKRAIKIIRDMCTSNSNFLELTTACVEIISRVNDEESSV
QDLVCKTFYEFWFEEPSGSQHHYFGDGSSVPLEVAKKTEQIVQMLRRMPSLQLLVTVIKR
NLALDFFSQSAKAVGINPASLASVRRRCELMCKCLLEKILQVIEMNTGEGEVLMLPYMRL
LHAFCVVDPTLCAPASDPSQFVITLQPYLKSQADNRVAAQLLESIIFVIDSVLPLLRKLP
ESVAEELEQDLKQMIVRHSFLTVVHACIKCLCSVSNVAGRGSTIVEHLIQLFFKRLDALG
FSNKQHFQQVGRSLFCLGLLIRYSSSLLHASVSSNNLHVSSSLNLFKKYLQAEDFVIKVR
SLQALGYVFIARPECMLEKDVGRILEATLSSNTDTRLKMQSLQNMYEYLLDAESQMGTNN
ASENEDANTAVGGPSVPVAAGAGDTNICGGIIQLYWSKILERCLDVNEQVRQSSLKIVEV
VLRQGLVHPITCVPSLIALETDPQEVNSKLAHHLLMNMNEKYPSFFESRLGDGLQMSFMF
IQAMNKGDSQSLKPQSKAPGIISGKSEPGSFTHARLGVSRIYKLIRGNRISRNKFMASVV
RKFDTPSLGDLVGPFLIYCTEILASLPFTSPDEPLYLIYSINRIIQVRAGTVEANMKGFL
QFLQAGYQKLNGSGGIQTESNQPIRCQTETMVASTKIEEVLEGDHVGVDYGSVEPYMPHL
ASLNPHGISNTDLQMIQVECLAAGALQLLLRLKRHLKILYDLNDARCQAYSPNDPLKPGE
SLSKQSLPFNVNEINIEHPKNYEDFVQRYQEFKNALKEDTVDYAIYTANIKRKRAAPRRS
RKSGRMMGGCEDEEYEEDEDWGSGMKSSNSGRRSSSRLRQHL
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattcaagtggcagtagtggtgttcctcatggtataagtttatcgaatacagtg
cactctgaaattgccccgtctttgcctttgccgtcacttcctgtcttctgcggcgcactc
gatcatcaacttaggttgttcgacgagcggagtgaatccagatcgttgaatcggagtgac
atacttattcacgctaacaaaattgctgatctgcttcacaatacagacgtttcttatttg
aaccttagagctgatgcaagttcacaatctcatggctttgtgggacaccttgacctgctt
aatgaagtgctgacatgtaactctgaagcctttgctctaataaatgcaggccccattaag
gagactgcacgaagtcgcaacgctaattcaaattctcttgagagtgtacctgctgtccaa
cttccacaacaaggcactgtagagatccacaattatcagcacgaccatgctattagtgat
cttactgcatcttctaggaaaccaaaagttaagaagaaaggaagggagagcaccttacta
tcaagtggccctgatgcttctgaatgtcaagatgcagttgcagcaggtttttgtgagatg
ttggaagatttttgtggcagggcagaaatttttagtgatgagcgggaggaaagagaattt
ttagcagtgtctgtggcagatcttaaagttgttctgagggagatcacatccatccgagca
aagaaagcactgaattcgattccagttgataatctactaagatttcttagggtcttagat
caccagattcatcgagcagaaggtttatcaattaatgatagtgaacatatggatgcagag
gttgtgtcatcgattttctgtgctttagagtccattcatgcagctttagctataatggct
tacaatgggatgcctaagcaattgtataaggaagaaatcattgaaagaatcgtggagttc
tcccggcaccaagttatggatgttatctttggtagtgatcccgtgtaccgtgcactgcac
aaaccacctgagagggggattcctgaaggtgaagaagatggagaggtcaatggggatttt
gtttcaccaaataggaagaagagatctactaggagtgcaaaaccaaggaaatcaacatca
aacaaggtttcttctgctgttggtaatatacttcagaagcttgatgtgattcttggtttt
cttaaggagttgtgcactatagagcatctaccagacagttgcattattcaacttattaag
acttgtttcacaacatttgtggttgaaaacatccagcttttgcaaatgaaatcaataagc
ttaataagtgggatattttatgcatacacacagcatcgtgcttctataatggatgaagca
cttctgattcttttgaaattaccctcttctaagcgcatgcccagaacttatcctctacct
gatgaagagcagaggcaaatccagttcatcactgctcttttaattcaaatagttcacagc
agttcaaaccttccagatgttttgagggaatcatctgacagtccttctctagaagtttca
gttgatgccagttaccctaccaaatcttgtgagtcagtcacggaagcatgctgtcttttc
tggagtcgtgttcttcaacgtctaacaaacacaaaaaatcaggaggcagctgagttgaag
acaatgattgagaatcttgtcattgatctgttaactactttgaatttgcctgaatatcca
gcctctgctcctcttttggaggttctttgtgttttactccttcaaaatgctgggttgaaa
tctaaagatatttctgttcgttcgatggccattgaccttcttggcacaattgctgcaagg
ctgaaacaagatgcagtccgctgtagggaggagaaattctggatagtaaaggagttgaga
agtggggaaatgattgaccggaatcctcccaaggatgcatgttctgtttgttcggatacc
aggattgaaaaatcacttgttcaatgccatggttgtcagagactatttcatcttaactgt
actggaatcaggggtcatgatattccgaatcgcggctttcattgccagatgtgtatctcc
aagaagcaacttcttgtactgaaatcactatgcgagtctcagtccaatgatgctgggcaa
aataaccgtactaactcaggaaaaatgtcacaagttgctgaggcaatcacaaatttggag
attgttcagcagctactactgaattatctccgtgatgctgcaactgtggatgatttacat
ctatttactcgctggttctatctttgtctttggtacaaagatgaccctaattcagagcaa
aagttcatgtattatgttgcacgattaaagtcacaagcaattgtgcgtgactctggttct
ctttcttcgctaatgacaagagagtcggcaaaaaagataactttagcattgggacagaat
agttctttttctagaggatttgacaagattctgcaagtgcttctggcaagtttgcgggag
aactctccaatcattcgtgcaaaggcattgcgagcagttagtatcattgttgaggctgac
ccagaggttttgggtgataagcttgtccaaacagcagtggaagggaggttttgtgactct
gctatatctgcccgagaagctgcgttggaacttgtaggcaggcatattgcttcatatcct
gatgttggtctgaagtactttgagaagttggcggagagaataaaggatactggagtaagc
gtgcgaaagcgtgctatcaaaatcatacgggacatgtgcacttcaaattctaacttctta
gagttaactactgcttgcgttgaaattatttcccgagttaatgatgaggaatccagtgta
caggacctggtctgcaagacattttatgagttttggtttgaagaaccttctggttcacaa
catcattatttcggagatggaagttctgttccacttgaggtggctaagaaaacagagcaa
attgttcagatgctgagaaggatgcccagtcttcaacttcttgtaactgtgattaaacgc
aacttagcccttgatttcttttcacaatctgctaaagctgtcggtatcaaccccgcgtcc
cttgcctcagtccgtaggcgctgcgagttgatgtgcaagtgcttacttgagaaaatactg
caggtgatagagatgaatacgggagaaggagaggtgcttatgctaccatacatgaggctc
ttgcatgccttttgtgttgttgatcctactctatgtgcaccagcttctgatccttcccag
tttgtgatcacgctacaaccttatttgaagagtcaggctgataatcgagttgctgcccag
cttttggagagtataatctttgtgattgattctgttttgcctttactaaggaagcttcct
gaaagtgttgctgaagaacttgaacaagatctgaagcaaatgattgttcggcattctttc
ttgacagttgtccatgcttgcatcaagtgcctctgctctgtaagtaatgttgctggaaga
ggctcaactatcgttgaacaccttatccagttattcttcaaacgccttgatgcactaggt
ttcagtaacaagcagcactttcagcaagtgggccggtctcttttctgcctgggtttgtta
atacgttacagtagctcattattgcatgcatctgtttccagtaacaacttacatgtttct
agcagcctcaacctatttaagaaatatcttcaggccgaagactttgtcatcaaggtccgc
tcattgcaggcactgggctatgtttttattgctcgccctgaatgcatgctggaaaaggat
gtaggaagaattttggaggccacactttcttctaatactgatacacggctcaagatgcaa
tctctgcaaaacatgtatgagtatcttcttgatgctgaaagtcaaatgggaacaaataat
gcaagcgagaatgaagatgctaacacagcagttggtggccctagtgtgcctgttgctgca
ggggctggtgataccaacatttgtggaggaataattcagttgtattggtctaaaatctta
gaaagatgcctagatgtgaatgaacaagtgcgtcagtcttctcttaagattgtggaagtt
gtactgcgtcaaggtcttgttcatcctattacctgtgttccctctttgatagctcttgaa
acagatccgcaggaggtgaactcaaagctggctcatcatttgttgatgaacatgaatgag
aagtatccatccttctttgagagtcgtcttggtgatggtctacaaatgtcatttatgttc
atacaagccatgaataaaggtgattctcaaagtttaaaaccccagtccaaagctccaggt
atcatatcagggaagtcagagcctggctcatttacccatgcaaggctcggggtatctcga
atctacaagctcatccgtggaaatcgtatttcaaggaacaaatttatggcctcagttgtg
cgcaaatttgatacgccaagcttgggtgatttagttggcccatttttgatttactgcact
gaaattcttgcttcgcttccattcacatcgcctgatgagcccctttatttgatctattct
ataaatcggattattcaagttagggctggcacggtggaggcaaatatgaagggattttta
caattcttacaagcaggctatcaaaaattaaatggaagtgggggcattcaaacagagtct
aatcaacctattaggtgtcagactgaaacaatggttgccagcacaaaaattgaggaagtg
ttggaaggtgaccatgttggtgtagattatggatcagtggagccatatatgccccatttg
gcatcattaaatccacatggcatatcaaatactgatttgcagatgatccaggtggagtgt
ctggcagctggtgctttacagttacttctgaggctaaagaggcacctcaagattctgtat
gatctaaatgatgcccgttgccaggcatattctccaaatgatcccctaaaacctggggaa
agtctttcaaagcaaagtcttcctttcaatgtgaatgaaattaacattgagcacccaaag
aattatgaagactttgtccagagatatcaggaattcaagaatgccttgaaggaagataca
gtggactatgcaatctacacggcgaacattaaaaggaaacgcgctgctccaagaagaagc
aggaaatctggtcgaatgatgggtggttgtgaggatgaagagtatgaagaggatgaagat
tggggtagtggaatgaagagtagtaatagtggcagaagaagcagtagcaggttaaggcag
cacttgtga
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