Solanum lycopersicum (tomato): 101259229
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Entry
101259229 CDS
T02665
Name
(RefSeq) cell division cycle protein 48 homolog isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
101259229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101259229
03009 Ribosome biogenesis [BR:
sly03009
]
101259229
04131 Membrane trafficking [BR:
sly04131
]
101259229
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sly04147
]
101259229
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
101259229
Ribosome biogenesis [BR:
sly03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
101259229
Membrane trafficking [BR:
sly04131
]
SNARE
SNARE associated proteins
Others
101259229
Autophagy
Aggrephagy
Other aggrephagy associated proteins
101259229
Exosome [BR:
sly04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
101259229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_33
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_18
AAA_17
AAA_28
Mg_chelatase
nSTAND3
ATPase_2
IstB_IS21
AAA_lid_PRS2_C
Parvo_NS1
ABC_tran
Viral_helicase1
AAA_7
NACHT
Vps4_C
TsaE
NB-ARC
DUF815
RCF1-5-like_lid
Zot
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
101259229
NCBI-ProteinID:
XP_004236235
LinkDB
All DBs
Position
3:complement(59775763..59779696)
Genome browser
AA seq
810 aa
AA seq
DB search
MADPKSSTSDSKNNKKDFATAILERKRSPNRLIVDEAINDDNSVVSMHPAKMEELQLFRG
DTVLLKGKKRKDTVCVVLADEQCEEHKVRLNKVVRANLRIRLGDVVSVHQCPDVKYAKRV
HILPIDDTIEGMTGNLFDAYLKPYFLESYRPVRKGDLFVVRGGMRSVEFKVVETEPGEYC
VVAPDTEIFCEGEPIKREEEERLNEVGYDDVGGMRKQMAQIRELVELPLRHPQLFKSIGV
KPPKGILLYGPPGSGKTLIGRAVANETGAFFFLINGPEIMSKLAGESEGNLRKAFEEAEK
NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSIDP
ALRRFGRFDREIDIGVPDEIGRLEILRIHTKNMKLDDNVDLERVARDTHGYVGADLAALC
TEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGASNPSALRETVVEVPNTS
WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC
QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSVGDAGG
AADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQ
IFKACLRKSPVAKDVDLSALAQYTHGFSGADITEICQRACKYAIRENIEMDIERERKRSL
NPEAMDEDDTDEVAEIKAAHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGLGTEFKFA
EHAANATPTGATADPFASVNAAGDEDDLYS
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccgaaatcttccacttccgactcgaaaaacaataaaaaggattttgctacg
gcaattttggagaggaagagatctcctaaccgccttattgttgatgaggctataaatgat
gataattcagtggtatctatgcaccctgctaaaatggaagagctccagctgtttagagga
gatactgtattgctaaagggtaaaaaacggaaggacactgtttgtgttgtccttgcggat
gagcaatgtgaagaacataaggtcagattgaacaaagtcgttcgggcgaaccttcggatt
cgtcttggggatgttgtatctgtgcaccagtgtcctgatgttaagtatgcgaagcgtgtt
catattcttcctattgatgatacaattgaaggcatgactggcaacctgtttgatgcctac
ttgaagccatacttcttggagtcttaccgccctgtgagaaagggcgatctctttgtagtc
agaggtggcatgcgcagtgttgagtttaaagtggttgagacggagcctggagaatattgt
gttgtagcacctgatacagagatcttttgtgagggagaaccaatcaagcgtgaagaggag
gagagactaaatgaagttggatatgatgatgttgggggtatgaggaagcaaatggctcag
atccgtgagctggttgaactccctctgaggcatccgcagttgttcaagtcgattggtgtg
aaaccaccaaaaggtattcttctctatggtccccccggatcggggaaaaccctgattgga
agagctgtggcaaatgagacgggtgcctttttctttttgattaatgggcctgaaattatg
tccaaattggctggtgagagtgagggtaacttgaggaaggcatttgaggaagccgaaaag
aatgcgccatctattatatttattgatgagttagactcgattgctccaaagagagaaaag
acacatggtgaagttgagcggcgaatagtttcccaacttctgacattaatggatggactc
aagtctcgatcacatgtgattgtcatgggggctaccaacagaccaaacagtattgatcct
gctctcaggagatttggaagatttgatcgggagattgacattggcgtaccagatgaaata
gggaggctggagatcctacgtattcatactaaaaacatgaagctcgatgataatgttgat
ctagagagggttgcaagagacacacatggttatgtcggagctgatcttgctgccttgtgc
actgaggctgcactgcagtgtatcagggagaaaatggatgttattgacttggaggatgag
accattgatgctgaagtgttgaattcaatggctgtgactaatgagcattttcaaactgct
ctgggtgcttcaaatccatcagcactaagagaaacggtagtggaggttcccaatacatct
tgggaggatattggggggctggaaaatgtcaagcgggaacttcaagagactgttcagtac
ccggtcgagcatcctgaaaagtttgagaagtttggaatgtcaccctccaaaggggtactt
ttctatggaccacctggttgtggcaaaactttactggccaaggctatcgcaaatgagtgt
caggctaactttataagtgtgaaaggaccggagttgcttacgatgtggtttggagaaagt
gaagcgaatgttcgggaaatatttgacaaggcacggcaatctgctccatgtgtactgttc
tttgatgaactcgattccattgctacgcagagaggaaattcggtgggagatgctggtggt
gctgctgatagagtactcaatcaattgttgacggagatggatggaatgacagcaaaaaaa
acagttttcattattggggcaacaaataggccagacattattgaccctgcattgctcaga
ccaggtcgtcttgaccaattaatttacatccccctcccggatgaagcttctcgtcttcaa
atcttcaaagcatgcttgcgtaagtcccctgtcgcaaaggacgtggatctgtcagctcta
gcacagtatacacatggttttagtggtgcagacataaccgagatttgtcagcgagcatgc
aaatatgccattagggaaaacattgaaatggatattgagagagagaggaagaggagcttg
aaccctgaagccatggatgaagatgacaccgatgaagtggctgaaataaaggctgcacac
tttgaggagtccatgaaatatgctcgaagaagtgtgagtgatgctgacattaggaagtac
cagctttttgctcaaacattacaacaatcacgcggacttggaactgagttcaaatttgct
gagcatgcagctaatgctacaccaaccggggcaacagccgacccatttgcttctgttaat
gctgctggagacgaggatgatttgtacagttaa
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