KEGG   Solanum lycopersicum (tomato): 101259391
Entry
101259391         CDS       T02665                                 
Name
(RefSeq) WD repeat-containing protein RUP2
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly04120  Ubiquitin mediated proteolysis
sly04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    101259391
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    101259391
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sly04121]
    101259391
Enzymes [BR:sly01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     101259391
Ubiquitin system [BR:sly04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    101259391
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     101259391
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_Prp19 Beta-prop_EML_2 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_EML EIF3I Beta-prop_DCAF4 Beta-prop_CAF1B_HIR1 Beta-prop_DCAF12 Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_TEP1_C WD40_like Beta-prop_WDR75_1st WD40_CFAP43 WD40_RFWD3 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 101259391
NCBI-ProteinID: XP_004249856
LinkDB
Position
11:734983..737232
AA seq 360 aa
MTDISSILHQEEEEEKARCEWDFHLSTIISSCNNLSGSGCDTIGVLEFDPCGNFLASGGI
ARKIRIYTVKSVQGERRIGDAPLALDHSNACDFFICTPAKLGSIKWKPGLGSRVLGSGDY
DGVVMEYDLEKKMPVFERDEHGGRRVWSIDYCQSDPVLGASGSDDGTMQMWDPRCGDSGK
CLAMVQPTKGYSTPVCCVEFNPFKGPIVAVGCADRRVYAYDMRKMLDPLFVLDGHEKAVT
YIRFLDERTIISSSIDGCLKMWNAEDQKVLRTYKGHSNSRRFVGLSVWKPGGLICCGSEN
NQVFVYDKRWGEPIWMYGREPRHEHGFVSSVCWQQKDENQCTLVAGDSDGVLRVFNGKRK
NT seq 1083 nt   +upstreamnt  +downstreamnt
atgacagatatttcatcaattttgcatcaagaagaagaagaagaaaaagcaagatgtgaa
tgggattttcatctttctactattatttcatcttgtaataatcttagtggatctggttgt
gacacaattggtgtgttggaatttgacccttgtggtaatttcctagcttctggtggtatt
gctaggaaaattcggatttacaccgtaaagtctgtccaaggcgagaggcgtatcggcgat
gcgcctctcgctttagatcacagtaatgcatgtgatttttttatttgtactccggccaaa
ctcgggagtataaagtggaaacccggtttagggagtcgggttttagggtcgggtgattac
gatggagtggttatggagtatgacctagagaaaaaaatgcccgttttcgagcgtgatgag
catggtggtagacgggtttggagcattgactattgtcagtccgatccggttttgggtgca
tccggatccgatgacggaaccatgcaaatgtgggacccgcggtgcggtgacagtggcaag
tgtttagctatggtacaacctaccaaagggtatagtacacccgtgtgttgcgtcgaattt
aatccgttcaaaggtccaatcgtagccgttggatgcgctgaccggagggtctacgcgtat
gatatgaggaaaatgcttgacccactctttgtcctggatggacacgagaaagcagttact
tacattagatttcttgatgaacgtactattatttcttcgagcatagatggttgtttaaaa
atgtggaatgcggaggaccagaaggtccttcgcacctacaaggggcatagtaatagtagg
aggtttgtagggttatcggtatggaaaccgggtggattaatttgttgtggctcagaaaat
aatcaagtttttgtatacgataaaagatggggtgaaccaatatggatgtatggacgcgaa
ccaagacatgagcatgggttcgttagtagcgtatgttggcaacaaaaggacgaaaatcaa
tgcacactcgtagctggagattcagatggtgttttacgagtttttaatggcaagaggaaa
tga

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