Solanum lycopersicum (tomato): 101259439
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Entry
101259439 CDS
T02665
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03030
DNA replication
sly03420
Nucleotide excision repair
sly03430
Mismatch repair
sly03440
Homologous recombination
sly03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101259439
03420 Nucleotide excision repair
101259439
03430 Mismatch repair
101259439
03440 Homologous recombination
101259439
03460 Fanconi anemia pathway
101259439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sly03000
]
101259439
03032 DNA replication proteins [BR:
sly03032
]
101259439
03400 DNA repair and recombination proteins [BR:
sly03400
]
101259439
Transcription factors [BR:
sly03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
101259439
DNA replication proteins [BR:
sly03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
101259439
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
101259439
MMR (mismatch excision repair)
101259439
DSBR (double strand breaks repair)
HR (homologous recombination)
101259439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
101259439
NCBI-ProteinID:
XP_004239312
UniProt:
A0A3Q7GID3
LinkDB
All DBs
Position
5:36775306..36779721
Genome browser
AA seq
636 aa
AA seq
DB search
MPVNLTANAISAINAGDVNSKPVVQVLNIKLIGTTQERYRLTLSDSESTQQAMLATQLND
RVKTGRVRKTSVVQLIEYICSTVQNRKIIVVLNMETIIPECEIIGNPKVIVESDLGAQKT
ISNNGNLSAQRSALASFANIKNLSAQNSNNSMKNYPPAIQPAYQPPPNYKSHGAIMKNEA
PARIIPIVALNPYQGRWAIKARVTAKGDLRRYNNSRGDGKVFFFDLLDSDGGEIRVTCFN
AVVDRFYDKIEAGKVYMISKGSLKPAQKNFNHLKNEWEIFLETTSTVDLCPDEDASIPRQ
QFSFRPICEIESAENNSIIDVIGIVTAVNPSVLILRKNGTETQRRILNLKDQSGRSVELT
LWGDFCNREGQNLQELAEAGVSPILAVKAAKVSDFIGKSIVTISSTHLFINPDSAEAQTL
REWFDQGGKDIASQSISRDNMPVGSKNEIRKTVFQIKDEGLGRSDKPDWLTVKATITFIK
TDTFCYTACPLMIGDRQCNKKVTRSENSKWQCDRCNQEFEECDYRYLLQAQIQDHTGLTW
VTTFQESGEEILGCPAKELYMMKYEEADDTRFSEIIRNCLFTQFLFRLKIKEEFYGDEHR
VKITVVKAEKVNHSAESRYLIDLISKNSVFFEQRKP
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgaacttgacggctaacgcgatctcggcgattaacgccggtgacgtgaactca
aagccagtggttcaggtattgaacatcaagttaatcggcaccacacaggaacggtaccga
ctcacactctccgattctgagtccactcagcaggctatgctagctactcagctcaatgac
cgagtcaaaactggccgtgttcgtaaaacctctgtcgttcagttgattgaatacatctgt
agcactgttcaaaatcgcaaaatcattgttgtccttaacatggaaactattatacctgaa
tgtgaaataattgggaacccgaaagtgattgtagaatctgatttaggagctcagaaaact
atatctaacaatggtaacttgagtgctcaaagatctgccctagcaagctttgctaacata
aaaaatttgagtgcccaaaattcaaataatagcatgaagaactatccacctgcaattcaa
cctgcatatcaacctcctccaaattacaaaagccatggggcaatcatgaagaatgaagca
cccgcccgcattattccaattgtagcattgaatccctatcagggtcggtgggctattaag
gctagagtgactgcaaagggggatttacgccgctataataattctagaggagatggcaag
gtcttcttctttgatcttcttgactctgatgggggtgaaatacgtgtgacttgttttaat
gctgttgttgatcgcttttatgacaaaattgaagctggaaaagtatacatgatatcaaaa
ggcagcttaaaacctgctcagaagaacttcaaccatctgaagaatgaatgggaaatattt
ttggagacaacttcaactgtagatctatgtccagatgaagatgcctctataccaagacag
cagttctcatttagacctatttgtgaaattgaaagtgcagaaaataattcaatcatagat
gtgattggaattgtgacagcagtcaatccttctgttcttatcctgagaaagaatggaacg
gaaactcaaagaagaatcttgaatctaaaggatcaatctgggcgaagtgttgagctgacc
ttatggggagatttctgtaacagggaaggtcaaaacctgcaagaactggcagaagctggg
gtctcccctattttagctgttaaagctgcaaaagttagtgacttcattgggaaatcaatt
gtaaccatttcgtccacacacctgttcataaatccagattccgcagaggctcagactctt
agagagtggtttgatcagggggggaaagacattgcttctcaatctatatctagggacaac
atgcctgtaggatcaaaaaatgagatacgcaagactgtctttcagataaaggatgaaggg
cttggtaggtcagataaaccagactggcttacagttaaggcaaccataacatttatcaaa
actgacactttctgttatactgcttgccctttgatgattggagatagacaatgtaataag
aaagtaaccaggtcagagaactccaaatggcaatgtgataggtgtaatcaagagtttgag
gaatgtgattacagataccttcttcaagctcaaattcaagatcatactgggttgacatgg
gtgacaactttccaggaatctggtgaagagattttaggctgtcctgcaaaggagctgtac
atgatgaaatatgaagaggctgatgataccagattttctgaaattattagaaactgtctc
ttcacacaatttctgttccggctaaaaatcaaagaggaattttatggtgacgagcatagg
gtgaaaattacagttgtcaaggcagagaaagtgaaccattctgcagaaagcagatatctc
attgatttaatttctaaaaattctgtcttttttgaacaaaggaagccataa
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