Solanum lycopersicum (tomato): 101259679
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Entry
101259679 CDS
T02665
Name
(RefSeq) putative DEAD-Box RNA helicase
KO
K14778
ATP-dependent RNA helicase DDX49/DBP8 [EC:
5.6.2.7
]
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sly03009
]
101259679
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101259679
Ribosome biogenesis [BR:
sly03009
]
Eukaryotic type
90S particles
Helicases
101259679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-GeneID:
101259679
NCBI-ProteinID:
NP_001288209
UniProt:
K4CX84
LinkDB
All DBs
Position
10:complement(700660..706603)
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AA seq
488 aa
AA seq
DB search
MEEEVQVDENFPLFSRKTKPATKKLVPAPTSIEETPKQLDKETNSGPTPSYITFSDLGLA
GWAVQTCNELGMKKPTPVQYHCIPRILSGQDVLGLAQTGSGKTAAFALPILHRLAEDPYG
VSCLVVTPTRELAFQLAEQFRALGSCLNLRCAVIVGGMDMITQTKTLMQRPHVVIATPGR
IKVLIEQNPDIPPVFSKTKFLVLDEADRVLDVGFEEELRAIFQCLPKNRQTLLFSATMTS
NLQTLLELSANKAYFYEAYEGFKTVESLKQQYIFIPKNVKDVYLQYILSKIKDIDVRSAI
IFVSTCRSCQLLGLLLEELEIDAAALHSYKSQSLRLSALHKFKSGQVPILVATDVASRGL
DIPTVDLVVNYDIPRYPQDYVHRVGRTARAGRGGLAVSFVTQNDVDLIHEIEAVLGKQLE
KFDCKENEVLDDISKVYKAKRVASMKMMDDGFEEKAESRKAQKQKMQNERKGKSKKQKRE
RVTKDIEV
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggaagtccaagtggatgagaattttcccttattctcccggaaaactaaaccg
gccacaaaaaaactcgttcctgctccaacctccattgaagaaaccccaaagcagcttgac
aaggagactaactctggtccaacccctagttatatcaccttctctgacttaggcctcgcc
gggtgggctgtacagacctgtaatgagctgggcatgaagaaacccactcctgtacaatat
cactgtatacccagaatactctccggacaggatgtgttaggtttagctcagactggtagt
ggaaaaacagctgcatttgcattgcctattcttcatcgtttagctgaagatccttatggg
gtgtcctgtcttgtggttactccgacacgggagcttgcgtttcagcttgccgagcagttt
cgggccctgggatcctgcttgaatttgcggtgtgctgtgattgtgggaggaatggatatg
ataacccagactaagactctgatgcaaagacctcatgtggtgatagcaactcccggaagg
attaaggttctcattgaacagaatcctgatattcccccagttttcagcaaaactaagttc
cttgtcttggatgaagcagatagagttctagacgtaggctttgaagaggagttgagagca
atctttcagtgtttgccaaagaatcgacaaactcttctgttttctgcaacaatgactagc
aacctgcagacgctacttgagctttctgcaaacaaagcatatttctatgaggcatatgag
ggattcaagactgtagaatcacttaagcagcagtacatttttattccgaaaaatgtgaag
gatgtctatctgcaatacattttatccaaaatcaaagatatagacgttcgctctgcaatt
atttttgtttccacctgcaggagttgtcagcttttgggcttgttgttggaagaactcgaa
attgatgctgctgcattgcattcatacaagtcccagtcactgaggctttctgctcttcat
aaattcaaatctgggcaggtcccaatattggtcgctactgatgtcgcgagtcgtggttta
gacattccaacagttgatctggtggtaaattatgacattccaaggtatccacaggattat
gttcatcgtgttggacgtactgcaagagctggacgaggtggacttgctgtcagctttgtt
actcagaatgatgtggatctcattcatgaaatagaagcggtgcttgggaaacaattggag
aaatttgattgtaaagagaatgaggtgcttgatgatatatcaaaggtttacaaggcgaag
cgtgttgcatcaatgaagatgatggatgatgggtttgaggagaaagcagaaagtcgtaaa
gcccagaaacagaaaatgcaaaatgagagaaagggaaagagcaaaaagcagaaaagagaa
agagtaacaaaagatatagaagtttga
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