Solanum lycopersicum (tomato): 101259772
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Entry
101259772 CDS
T02665
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03013
Nucleocytoplasmic transport
sly03015
mRNA surveillance pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101259772
09122 Translation
03013 Nucleocytoplasmic transport
101259772
03015 mRNA surveillance pathway
101259772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101259772
03041 Spliceosome [BR:
sly03041
]
101259772
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101259772
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101259772
Spliceosome [BR:
sly03041
]
Complex C
Other components
EJC/TREX
101259772
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101259772
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
101259772
NCBI-ProteinID:
XP_004245029
UniProt:
A0A3Q7IIB9
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All DBs
Position
8:complement(47765573..47771642)
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AA seq
427 aa
AA seq
DB search
MGENKENDAYEEELLDYEEDDEKIPDSTTKVNGESSKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVL
CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRILAL
ARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLMECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaacaaggagaacgatgcttatgaggaggagcttctcgactatgaagaagat
gacgaaaaaattcctgattctaccacaaaagtcaacggcgagtcgtccaaaaagggttac
gttgggattcacagttcaggtttcagagactttcttctaaagccagagttgctgcgtgct
attgttgattctgggtttgagcatccgtccgaagtgcaacatgagtgcattccgcaagct
attctgggtatggatgtcatttgccaagctaaatctggaatgggaaaaaccgctgttttt
gtcctttcaactctgcaacagattgaaccagttgctggccaagttgctgcccttgttcta
tgtcacactagggaattagcttatcagatctgtcatgagtttgagaggttcagcacttat
ctgcctgatataaaggttgctgttttctatggtggtgtcaacatcaagctccacaaagag
ctgctgaagaatgaatgccctcatattgttgttggaactcctggaagaatacttgcattg
gcaagagacaaggacctgtctttgaggaatgtgaggcattttatactagatgaatgtgac
aagatgcttgaatcacttgacatgaggagagacgtgcaggaaatcttcaagatgactcct
catgacaagcaagtcatgatgttttctgcaactctcagcaaggagattcgcccggtttgc
aagaaattcatgcaagatccaatggaaatttatgttgatgatgaggccaagttgaccctg
catggacttgttcagcactacatcaaattgagtgagacggagaaaaaccggaagctgaat
gacctattggatgcgttggacttcaaccaagtcgtaatttttgtcaagagtgtgagcaga
gcagcagagttgaacaagttacttatggagtgtaatttcccatctatctgcatccactcc
ggcatgagtcaagaagaaagactgacacgctacaagggtttcaaggaagggcacaagaga
attcttgtggcaactgatttggttggtagaggcatagacattgaaagggtgaacattgtt
attaactatgatatgccagattctgcagatacttatcttcacagagtgggaagagctggt
agatttggaactaaagggcttgccataacttttgtgtcatctgcatcagattctgaagtt
cttaatcaggttcaggagaggtttgaagtggatattaaagaacttcctgagcagattgat
acttctacatacatgccatcttaa
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