Solanum lycopersicum (tomato): 101260293
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Entry
101260293 CDS
T02665
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
KO
K14411
RNA-binding protein Musashi
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101260293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101260293
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101260293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
SET1_RBD
Motif
Other DBs
NCBI-GeneID:
101260293
NCBI-ProteinID:
XP_004250279
UniProt:
A0A3Q7IT23
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Position
11:complement(5955840..5959997)
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AA seq
465 aa
AA seq
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MEMEPGKLFVGGISWDTNEDRLKEYFQAFGDVIEAVIMKDRITGRARGFGFVVFADPSVA
ERVVKEKHIIDGRTVEAKKAVPRDDQHITRNNGSMQGSPGPARTKKIFVGGLASSVTESD
FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDKVLYKAFHELNGKMVEVKRA
VPKELSPSPARSPFNGQNYGLNRVNNLLNAYTQGYVPSSIGNYGMRMEGRYSPLTAGRNG
YSSFNPADFNLPSGMDSTLNLNYGGNGNFGSNYGRGFNSLYNGNSNRFNGPVGFAPGRVG
SSSMLNSVGWNLWDNESLNYGTNSANSTDFVGSGSGAAGYGTLGGLGTIWGSSSISGQGG
GNGSFGTGNIANSGEAVGTGYGRNSGSNAVNTSPYSSAKDIPAGAFGNLYGNTVGASFYE
DSAWRSTSPELDDSASFGYGLGNAESLGYVGGYSVANRSNKGIAA
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagcctggaaaattgtttgttggtggaatttcttgggacactaatgaagat
cgtctcaaagaatatttccaagcttttggtgatgtgattgaagctgtgataatgaaagat
cggatcactggtcgtgctcgtggttttggttttgttgtttttgcagacccttctgttgcc
gaaagagttgtgaaggaaaaacacataattgatggtagaactgtagaggcaaagaaggct
gttccaagagatgatcaacacattaccagaaacaatggtagtatgcagggttctccaggt
ccagctcgcactaaaaagatttttgttggaggtttggcatcctcagtcaccgagagtgac
ttcaagaattactttgatcaatttgggacgatcaccgatgttgtagtaatgtatgatcac
aacacacaaaggcctagaggctttggatttattacttttgactcagaggaggcagttgat
aaagttctatacaaggcgtttcatgaacttaacggtaagatggttgaggttaaacgtgca
gtacccaaagagctgtcacctagtccagcccgaagcccatttaatggacagaactatggt
cttaatagggttaacaatttgcttaatgcatatacccaaggttacgttccaagctcgatt
ggaaattatggaatgagaatggaaggtagatacagtcctcttactgctggtcgaaatgga
tattcatcctttaatcctgctgactttaacttgccgtcaggcatggactccacattgaac
ctaaattatggtggaaatggaaattttggttctaattatggacgtggattcaattcctta
tacaatgggaattcaaacaggttcaacggtcctgtcgggtttgcccctggaagggttgga
agcagttcaatgttgaattcagtaggatggaacctgtgggacaatgagagtcttaattat
ggaacaaattctgccaactctactgatttcgttggttctggaagtggggctgcgggatat
ggtacgttggggggtctcggaacaatctggggttcctcctcaatttcgggtcaaggtgga
ggaaatggttcttttggaactggcaacattgctaacagtggcgaagcagttgggacaggg
tatggacgaaactcaggaagcaatgctgtcaatacatcaccttattcctcagcaaaagac
attcctgctggagcttttgggaacttgtatggtaatactgtaggtgcttcgttctatgag
gactcagcctggcgttcaacatctccagaactagatgactctgcatcctttggttatgga
cttgggaacgcagagtcacttggttatgttggtggttatagtgttgcaaatagatcaaat
aaaggaattgctgcctag
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