Solanum lycopersicum (tomato): 101260608
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Entry
101260608 CDS
T02665
Name
(RefSeq) protein PAT1 homolog 2 isoform X2
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101260608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101260608
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101260608
mRNA degradation factors
5'-3' decay
Decapping complex
101260608
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GFIT
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NCBI-GeneID:
101260608
NCBI-ProteinID:
XP_004251557
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Position
12:complement(1295171..1301763)
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AA seq
817 aa
AA seq
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MERSDCKDFMDLSNSSSSISDNALFDASQYAFFGRDIGEEVELGGLEEEGNNCVPAVDGG
FGDVDTHEYHLFEKDEGSALGSLSDIDDLATTFSKLNRNVAGPRHPGIIGDRGSGSFSRE
SSLAAEWAKETDFPDCFDQHLSDTECYQDSKRWSSQSHLSPLHLSESKPLYRTSSNPEQP
QQLQRFSSEPILVAKSSFTSLPPPAGRSLQASPYSLSHHQSMPSLAAGPHSHYSNANLST
LSNSNIHLPGLSHGLHYGGNMPQWTLPSLSLDTRLQNHWTSHASLSHGDHSRLLNSLSPH
QFPRNGLLSPLLISSQQLQQQRLHHSVQPSLAHFSALPSQFNSFPSPAHLGKHGLDDFRD
SKSKSSHKGRQNVRFSKLSSEGSSQKSENNVPKFRSKYMTGDEIESILKMQHPATHCNDP
YADDYYYQARLAKKAAESRSKHRFCPNKEQPSRSRNSTDSQPHLHVDAKGQISFSFIRRP
RPLLEYDPPGFVCNGSGDQKISEKSLEQEPMFAARITVEDGFYLLLEVDDINRLLHFSQP
QDGGVQLKRKRQILLEGMAASLQLVDPLGKSGSSVGLTPKDDIVFLWLVSLPKGRKLISR
YLQLLVPGSELVRIVCMAIFRHLRFLFGGFPPDLEAAETVTALAKTVSACTSRMDLNLLS
ACLAAVVCSSEQPPLRPLGSPAGDGASVILKSVLERATHLLTDPQTVSGLSMPNPALWQA
SFDAFFGLLTKYCLSKYDSIMQSLMSPAQSNTELIGSEAARAVSREMPVELLRASLPHTN
EHQRKLLLNFAQRSMPVTGFNAHGVSSGQINPESVSC
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggagagatccgattgcaaagatttcatggacttgtctaactcttccagctccatctca
gataatgctctcttcgatgcatcacaatatgcattttttggtcgagatataggagaggaa
gttgaattgggtggtctagaggaagaaggaaacaattgtgttcccgcggtggatggtgga
tttggtgatgtcgatacacatgagtaccatttgtttgaaaaagatgagggatcagctttg
gggtctttatctgacatagatgatctggcaactacattttcaaagttgaacagaaatgtc
gcaggacctaggcatccaggaattattggtgatcgtggatcaggatcgttttcgagggaa
agttcattggcagctgaatgggcaaaggaaactgattttcctgattgttttgatcagcat
ttgtctgacactgaatgttaccaggatagcaaaagatggtcttctcagtctcatttatct
cctctgcatctgtcagagtcaaaaccgttgtatagaacatcctcaaatcctgagcaacca
caacaacttcagcgcttctcaagcgaacccattttagtggcgaagtcatctttcacttct
ctccctcctccggctggcagatctctacaagcctcaccatacagtttatcacatcatcaa
agcatgccatctcttgctgctggacctcactctcactattcaaatgccaatctctctact
ttgtcaaattctaatatccatttaccaggcttgtctcatgggcttcattatggtggaaac
atgccacaatggacacttcccagtctttctctcgatacccgtctacaaaatcactggact
agtcatgcgagtctcagccatggggatcattctagactattaaatagtttatctccacat
caatttcctcggaatggtttgttatctcctctgttaatctcttcccagcaactgcagcag
caaagattgcatcattcagttcaaccatctttagctcatttttctgcactgccttcccag
tttaattcctttccttctcctgcccacctgggtaagcatggattggatgattttagagat
tcaaaatctaagtcatcacataaaggtagacagaatgtgcgcttttctaaactaagctct
gaaggcagtagccaaaaaagtgagaataatgttcccaagttcagatctaagtacatgact
ggtgatgaaatagagagcatcctgaaaatgcagcatcctgcaacacattgcaatgatcca
tatgcggacgactattattaccaagctcgccttgcaaagaaagcagctgagtcgaggtca
aaacatcgtttttgtccaaacaaggagcaaccttcacgatcacgcaacagtacagactca
cagcctcacctccatgttgatgctaaggggcaaatttcattttctttcatccgcaggcct
cgtcctcttcttgagtatgatccaccaggatttgtatgtaatggcagtggtgatcagaag
atatctgagaaatctttggagcaggaaccaatgtttgctgctagaattacagtagaggat
ggtttttatcttctccttgaggttgatgacatcaataggctacttcattttagtcagccg
caagatggtggtgttcagctgaagcggaagcggcagattctgttggaaggcatggctgcc
tcacttcagcttgttgatccgcttggaaaaagtggcagttcagttgggctgacccctaaa
gatgacattgtgttcttatggttggtgtctcttccaaaaggccggaaactcatttcaagg
tatcttcagcttcttgtacctggcagtgaacttgtaagaatagtttgcatggcaattttt
cgccatttaaggtttttgtttggcggctttccacctgatctagaagctgctgagactgtc
actgcacttgcaaaaactgtctctgcatgtacaagtcgcatggaccttaatttgcttagt
gcttgtctagctgctgttgtttgttcctcagagcagccacctcttcgccctcttggaagc
cctgctggagatggagcctctgttattcttaaatctgttcttgaaagggcaactcatctc
ttgactgatcctcagactgttagcggcttgagcatgcctaaccctgccctttggcaggca
tcttttgatgccttctttggtttacttactaagtattgtttgagtaagtatgactctata
atgcaatcgctcatgtcaccagcccagtcaaacacagaactgattggttcagaagctgca
agagctgtaagcagagaaatgccagtcgaactcttacgtgctagtctcccacacacgaat
gaacaccagaggaagctgttgttgaattttgctcagaggtccatgcctgtaactggattc
aatgctcatggtgtaagcagtggacaaataaatcctgaatctgtaagctgttag
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