Solanum lycopersicum (tomato): 101260684
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Entry
101260684 CDS
T02665
Name
(RefSeq) vacuolar sorting protein 39 isoform X2
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly04142
Lysosome biogenesis
sly04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
101260684
04148 Efferocytosis
101260684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sly04131
]
101260684
Membrane trafficking [BR:
sly04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
101260684
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_19
TPR_WDR35
zf-HC5HC2H
TPR_MalT
zf-HC5HC2H_2
AlaDh_PNT_N
Motif
Other DBs
NCBI-GeneID:
101260684
NCBI-ProteinID:
XP_004232411
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Position
2:complement(64486237..64497834)
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AA seq
1001 aa
AA seq
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MVHTAYDTFQLLNNSPSKIDAIESYRSNLLIACSDGSLRVYVPESSVSDQSDFHSETLGL
HQGPYVLERTLNGFSRRQMLAMEVLVSRELLLSLSESIALHRLPDLETLSVITKAKGANV
YSWDDKRGLLCFGRQKRVCIYKHDGGSGFVEVKEFGVPDTVKSMSWCGENICLGIRREYK
ILNTTNGVLSEVFSSGRIAAPLVVALPPGELLLGKDNIGILVNQNGKLIQEGRICWSEAP
AAVIIQKPYAIGLLGRHVEIRSLRVPYPLIQTVVLRNVRHLVQSNNTVIVALDYSVFGFF
AVPLGAQIVQLTASGNFEEALALCKLLPPEDSSLRSSKEQSIHMRYAHFLFENGSYEEAM
EHFLASQVEITYVLALYPSIIVPKSSCIPEPQKFADVADAPYLSRGSSGLSDDLDSPSSD
VFESDEMDIESKKMSHNTLMALIKYLQKKRYSVIEKATTEGTEEVVSDAVGDNFISYGTD
RSKKPTKGRIHIPITSIARDMAAILDTALLQALFLTGQSSAATNFLKVLNYCDVKICDAF
LQERSQYACQVELYRCNSMHHEALKLLHQLVEESKSEQTPVELLTKFKPDMIIEYLKPLC
ATDPMLVLEFSLPVLESCPMQTIELFLSGNIPADLVNSYLKQHAPDMQATYLELMLAMNE
NSISGNLQNEMVQIYLSEVLDFHAEHNSQQKWDEKTCPPPRKKLLSALEGMSGYTPEVLL
KRLPPDALYEERAILLGKMNKHELALSIYVHKLHAPELALSYCDRVYDSGLQQHSAKSYG
NIYLTLLQIYLNPRKTTKKFEKKITNLVSAQSPRIPKVGLGTTGKVKGGRSKKIAEIGGA
EDTRFSLSGTDSGRSDGDTEDAAEEGGSTIMLDQVLDLLSRRWDRIHGAQALKLLPRDTK
LQNLLPFLGPLLRKSSEAYRNFSVIKSLRECENLQVKDELYNQRKAVLKITSDSMCSLCN
KRIGTSVFAVYPNGKTIVHFVCFRDSQNMKAVGRGSQLRKR
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggtgcacactgcctacgataccttccaactcctcaataattctccctccaaaatcgat
gccattgaatcataccgctcaaatttgctcatcgcatgttccgatggatcgctccgtgtt
tacgttccagaatcctcagtttccgatcaatctgatttccattccgaaaccttagggctt
catcaaggaccatatgtgcttgaaagaactctgaatggattctccagaagacaaatgctg
gccatggaagtcctcgtctcacgagaacttctgctttccctctccgagtcaattgcgtta
catcgattgcctgatttggagactttatcagtgattactaaggctaaaggtgcaaatgta
tattcgtgggatgataaacgagggttactttgcttcggcaggcaaaaaagagtctgtatt
tacaaacacgacggggggagtggatttgtggaggtgaaagaatttggagtacctgacaca
gttaagtcgatgtcatggtgtggtgagaatatttgcttggggattagaagagagtacaag
atattgaataccactaatggtgtattgtctgaggtgttctcttcagggaggatcgccgca
cctcttgtggtggctcttccacccggagaactacttttgggcaaggataatattggtatc
ttagttaaccaaaacgggaagttgatccaagaagggaggatttgttggtctgaggctcct
gcagctgttattatccagaagccgtatgcaataggtcttttggggcgacatgttgagata
cgttctcttcgtgtaccttatcctttgattcaaacagttgtccttcggaatgttcgtcat
cttgttcaaagcaacaatactgtgattgttgctcttgattattctgtttttggatttttt
gctgtacctcttggtgcgcagattgtacaactaacagcatctggaaactttgaggaggcc
ttggctttgtgcaaattgctaccaccagaagattccagtcttagatcttcaaaggagcag
tcaattcatatgagatatgcgcactttctatttgaaaatgggagctatgaagaagcaatg
gaacattttctggcatctcaagttgaaatcacttatgtgctcgccttatatccatccatt
attgttccaaaatcatcttgcatacctgaaccacagaaatttgcagatgttgcagatgca
ccatatctctcccgaggctcttctggtctgtcagatgatctagattctccgtcttcggat
gtatttgaatctgatgaaatggatatagagtccaagaaaatgagccacaacactttgatg
gctctgattaagtatttgcagaaaaagagatacagtgtcattgagaaagcaacaactgag
ggaactgaagaagtggtttcagatgctgttggagataatttcatttcttatggaactgac
cggtccaaaaaaccaaccaagggcagaattcatattcctatcacttccatcgctagggac
atggctgcaatactggacactgcacttcttcaagctctgtttttaactggacagtcctct
gctgctacaaattttctgaaagtcctcaactactgtgatgtgaaaatatgcgatgcgttc
ctgcaagagagaagccagtatgcttgtcaggtagaactttatagatgcaattcaatgcat
catgaagcactgaaacttcttcatcaactggtagaagagtccaagtcagagcaaactcct
gtagagctcttaacgaagttcaagcctgatatgatcattgaatatctcaaacccctttgt
gcaactgaccccatgcttgtcctggagttctcattgcctgttcttgaaagctgtccgatg
caaaccattgagctatttttgtctggtaacattccagcagacttggtgaattcttactta
aagcagcatgctccagacatgcaggcaacatatctagaactcatgcttgccatgaatgaa
aatagtatctcagggaatctgcagaatgaaatggtgcaaatttatctctcagaagtgctt
gattttcatgctgaacataattcacagcaaaagtgggatgagaaaacatgtcctccacca
aggaaaaagctactgtctgctttggagggtatgtctggatatactccagaggtgttgctg
aagagacttccaccagatgctctgtatgaagaacgtgcaattcttttggggaaaatgaat
aaacatgaacttgccctgtctatttatgtgcacaagcttcatgctcccgaacttgcactg
tcctattgtgaccgggtgtacgattcaggacttcaacaacattcagcaaaatcttacgga
aacatttacctgactctactgcaaatctatctaaatcctaggaagacaacaaaaaaattt
gagaagaaaattactaatctggtatcagctcagagccctaggattccaaaagttggttta
ggaactacaggaaaggtaaaaggaggccgctccaagaaaattgctgaaattgggggcgct
gaggacactcgattcagtctaagcggcacagacagtggtaggagtgatggagatacagaa
gatgctgccgaggaaggtggttctactattatgctagatcaggtacttgatcttttgagc
agaaggtgggatcgaatccatggtgcccaagcgctgaaactgcttccaagggatactaag
ctacagaacttgcttccatttcttggacctcttctgaggaaatccagtgaagcatatcgg
aacttctcagtgataaaaagcttgagagagtgtgaaaacctacaggttaaagatgaactg
tataaccaaagaaaagcagttttgaagatcacaagcgatagcatgtgctctctttgcaat
aagaggattggcaccagtgtctttgcagtctatcctaatggtaagacaattgtgcacttt
gtctgctttagagattcacagaatatgaaggcagttggaagaggctctcagttgaggaaa
agatga
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