Solanum lycopersicum (tomato): 101260927
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Entry
101260927 CDS
T02665
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
101260927
Enzymes [BR:
sly01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
101260927
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
Motif
Other DBs
NCBI-GeneID:
101260927
NCBI-ProteinID:
XP_019068918
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Position
4:complement(5329975..5335576)
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AA seq
687 aa
AA seq
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MMGKLKGILFWFIIVVQLFSIVTSRTMHHARHTRLKHRHHDQMMHPPPVTHRHVDMMHPP
PVTLHISNRYVVIDNGIVQLTLTNPTGHISGISYNGIDNLLEKKNREVRRGYWDVMWKLP
KDQGGTFDTFFMKNFKVISQDDDKVEVSFTKTWNSNADHDLPLNIDKRFVMLRGNSGFYS
YGKFEHLEGMPALRVDEARIAIKLSQNLFHYMAVSDDRQRVMPTNQDISHGKALAYKEAT
QITHPSNSPFNYEVDDKYQFSSDNKDIKVHGWICNNPHVGFWVITPTNEYTCGGPMKQDL
TSHSGPTSLATFFSGHYTGPQLGLDLQDGESWKKVFGPVFFYLNSDSGNNHQTLWEDAKR
QMFEETKKWPYDFPQSKEYLKANEQATVSGRLLVNDRYISEDPFYAKSAYVGLALPGDVG
SWQTETKGYQFWTQTDESGYFKINGVIPGSYNLYSWVPGVIGDYKYNLNFTITQGSDINL
GDLVYNPPRNGPTLWEIGIPDRTAAEFFVPDPLPSLTNHVFINSTTHRFRQYGLWDRYTD
LYPNEDLVYRVGVSDYTKDWFYAHVTRRTVHKQYIPTTWQILFDLSTVDPSGTYTLHIAL
ASATSSHLLGRINNPTKPRPIFQTPGLGKSNAIARHGIHGLYSLFTFEILGNNLQIGENI
IYLTQAKGGTPFNGVMYDYIRLEGPSQ
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgatgggaaagttgaaaggaattttattttggtttataatcgtagttcaacttttctcg
attgttacttcgaggacgatgcatcatgcaaggcatacacgattaaaacataggcatcat
gatcagatgatgcatcctcctccagtcacacatagacatgttgatatgatgcatcctcct
ccagtcacattgcacatctcaaatcgatacgtggtgatagataatggcattgttcaactt
accctaacaaatccaactggacatatttctgggataagttataatggaatcgataatcta
ttggaaaaaaagaatcgagaagtaaggagaggatattgggatgttatgtggaaacttcca
aaagaccagggtggcacttttgatacgttttttatgaaaaatttcaaagttatatcacaa
gatgatgataaagttgaagtttcttttacaaaaacgtggaattccaatgcagaccatgat
cttcctctaaacattgacaaaaggtttgtgatgctaagaggaaattcaggattttattca
tatggaaaatttgagcatttagagggaatgcctgcacttagagtagacgaagcaagaatt
gcaatcaagctcagtcaaaacttgtttcactatatggctgtatcagatgataggcaaagg
gtaatgccaacaaatcaagatatatcccatggaaaagcccttgcctataaagaagctact
caaataacacatccatccaattctccatttaactatgaggttgatgacaagtaccaattt
tcttctgataacaaagatattaaagtacatggatggatttgtaataatccacatgtaggt
ttttgggtgattacaccaactaatgaatatacatgtggtggaccaatgaaacaagatctt
acttctcattctggtcccacctctctagccacattttttagtggccattatacaggtcca
caattaggattagatctccaagatggagaatcatggaaaaaagtatttggtcctgttttc
ttttatctcaattcagattctggtaataaccatcaaaccctttgggaggatgctaaaaga
cagatgtttgaagaaactaaaaaatggccatatgattttccacaatcaaaagaatatctc
aaagccaatgaacaggccacagttagcggtcgattattggtcaatgacaggtacataagt
gaagatcctttttatgcaaaatcagcatatgttggattggccctgcctggagatgttgga
tcatggcaaactgaaaccaagggttatcaattttggactcaaacagatgagtctgggtat
ttcaagattaatggagttatacccggaagttataacttgtactcatgggtccctggagtt
attggagattacaaatacaacctcaactttaccataactcaaggaagtgacattaatcta
ggtgacttagtttataatcctccaagaaatggtccaactttatgggaaattggaattcct
gatagaactgcagctgaattttttgtgcctgatccattgcctagcctcaccaatcatgta
ttcataaacagtacaacacataggtttagacaatatggtttatgggatcgttatacagat
ttatatcctaacgaagatttagtatacagagttggtgttagtgattacacaaaggattgg
ttctatgcccatgtaaccaggaggactgtacataaacaatatataccaacaacatggcaa
attttatttgatctttcaactgtggatccaagtggaacttatacactccatatagcatta
gcttcagccacttcttctcatttgctaggaagaataaacaatcctaccaaaccaaggcca
atttttcagaccccaggacttggaaaaagtaatgcaatagcaagacatggaattcatgga
ctatactcacttttcacttttgaaattctgggaaataatttacaaatcggagaaaatatc
atatatttaactcaagctaaaggtggtaccccttttaacggagtaatgtatgattatatt
agactcgaaggaccttcgcagtaa
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