Solanum lycopersicum (tomato): 101261002
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Entry
101261002 CDS
T02665
Name
(RefSeq) pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly00040
Pentose and glucuronate interconversions
sly01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
101261002
Enzymes [BR:
sly01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
101261002
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
101261002
NCBI-ProteinID:
XP_004252509
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Position
12:complement(61981931..61984186)
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AA seq
382 aa
AA seq
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MMKTYHKPSYFMLFTTLIITITSSTSFVHGLNVIDKCWRTNPNWRSQRQYLAKCSVGYSG
KMTNNIGNDVVIYKVTDNSDDPLNPKPGTLRYAMTHIKGKIWVTFEQNMKIRLQKPLLVS
SFTTIDGRGAKVNIAGGACLMLQRVTNVIIHGLRIHHCKAQTASRVMGPDKKIVNVGAVD
GDAIRMVTSSKIWIDHNTLYESEDGLIDVTRGSTNITISNNWFRTQNKVMLLGHDDGYLR
DKNMKVTVAFNYFGPNCNQRMPRVRHGYAHVVNNIYKGWGNYAIGGSMNPSIKSQANYFY
APKDGKKEVTWKKESGVVGEVAGNFQSVEDVFANGACFNGSGSGRGSVKPNYSPEQAFPV
EDGHKVKDLTRNAGALKCSSTC
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaaacttatcacaagccttcatatttcatgttatttactacactaattataaca
attacttcaagtacaagttttgtgcatggattaaacgtgattgataaatgttggagaaca
aatccaaattggaggagtcaaagacaatatttggctaaatgttctgttggttattctgga
aagatgactaataatattggaaacgacgtagtaatatacaaagttactgataatagtgac
gatcccttaaatcctaaacctggaaccctaagatatgcaatgacgcatattaagggaaag
atttgggtaacttttgaacaaaatatgaaaattagactccaaaaacctcttttagtcagc
agctttactaccattgatggccggggagctaaggttaacattgctggtggcgcttgtcta
atgcttcaaagggtgacaaatgtgatcattcatggtctaagaatccaccattgcaaggca
caaactgcgtcaagagtcatgggacctgataaaaaaatcgtaaatgtaggtgcagtggat
ggggatgcgattagaatggtgacttcttcgaagatttggattgatcataacaccctctat
gaaagtgaagatggtctgattgatgtgactcgtggttctacaaatattactatatctaat
aattggtttaggacacaaaataaggttatgttgttaggtcatgatgatggataccttaga
gacaaaaacatgaaggttactgttgcattcaactattttggtcctaattgcaaccaaaga
atgccaagggttcgtcatggatatgcacatgtggttaacaatatatacaagggatggggt
aactatgcaatagggggaagtatgaacccaagcattaagagccaagctaattatttctat
gcaccaaaagatggaaagaaagaggtcacatggaaaaaagagagtggtgtagttggtgaa
gtggctgggaatttccagtcagttgaagatgtatttgctaacggagcatgtttcaatgga
tcgggttcaggtcgtgggtcggtgaagccaaactattcaccagagcaagcttttccggtg
gaagatggacacaaggtcaaggacttgacaaggaatgcaggtgctttaaaatgttcttct
acctgttga
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