Solanum lycopersicum (tomato): 101261336
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Entry
101261336 CDS
T02665
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03013
Nucleocytoplasmic transport
sly03015
mRNA surveillance pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101261336
09122 Translation
03013 Nucleocytoplasmic transport
101261336
03015 mRNA surveillance pathway
101261336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101261336
03041 Spliceosome [BR:
sly03041
]
101261336
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101261336
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101261336
Spliceosome [BR:
sly03041
]
Complex C
Other components
EJC/TREX
101261336
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101261336
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
101261336
NCBI-ProteinID:
XP_004241774
LinkDB
All DBs
Position
6:43864185..43871076
Genome browser
AA seq
428 aa
AA seq
DB search
MGDTKENEAYEEELLDYEEDDEKAPDSVNGKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVPGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRVLA
LARDKDLPLKNVRHFILDECDKMLDSLDMRRDVQAIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLAECNFPSICIHSGMTQEERLTRYKAFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagatacaaaggagaacgaagcttacgaggaagaacttctcgactacgaagaagat
gatgagaaggccccagattccgttaatggaaaagttaacggcgaatctgccaagaagggt
tatgttggaattcacagttctggattcagagactttcttttaaagccagagctactgcgg
gctattgtggattcagggtttgagcatccctctgaagtgcaacatgagtgtattccacaa
gctattctgggtatggatgttatttgtcaagccaaatctggaatgggcaaaactgctgtt
tttgttctttcgactctgcagcagattgaacctgttcctggtcaggttgctgctttggtc
ctatgtcatacaagggaattagcttatcagatctgtcatgaatttgagaggttcagcaca
tatttacctgatatcaaggttgctgtcttctatggtggtgtcaatatcaaacttcacaag
gagcttctgaagaatgaatgtcctcatattgttgttggaactcctggaagagtacttgca
ttggctagagataaagaccttcctctgaagaatgtgaggcattttattctggatgaatgt
gacaagatgcttgattcacttgacatgaggagagatgtgcaggcaatcttcaagatgact
ccccatgacaagcaagtaatgatgttttcagcaacgctcagcaaggagatccgtccagtc
tgcaaaaaatttatgcaagatccaatggaaatttatgttgacgatgaggcaaagttgacc
cttcatggacttgtacagcattacatcaaattgagtgaaacggagaaaaaccggaagcta
aatgatctgctggatgccttggacttcaatcaagtggtaatatttgtcaagagtgtgaac
agggcagcagagctgaataaattactagcggagtgtaattttccatctatctgcatccac
tctggcatgactcaggaggaaagattgacgcgctacaaagctttcaaggagggtcataag
agaattcttgtggcaactgatttggttggtaggggcattgacattgaaagggttaacatt
gttattaactatgacatgccagattctgcagacacttaccttcacagagtgggtagagct
ggtaggtttgggacgaaaggccttgccattacatttgtgtcctctgcgtcagattctgaa
gttcttaatcaggttcaggaaaggtttgaagtagacataaaagagcttcctgagcagatt
gatacttctacgtacatgccatcttag
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