Solanum lycopersicum (tomato): 101261492
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Entry
101261492 CDS
T02665
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101261492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101261492
03041 Spliceosome [BR:
sly03041
]
101261492
03009 Ribosome biogenesis [BR:
sly03009
]
101261492
03016 Transfer RNA biogenesis [BR:
sly03016
]
101261492
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101261492
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101261492
Spliceosome [BR:
sly03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101261492
Complex C
U4/U6.U5 tri-SnRNP related factors
101261492
Ribosome biogenesis [BR:
sly03009
]
Eukaryotic type
Pre-60S particles
Helicases
101261492
Transfer RNA biogenesis [BR:
sly03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101261492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
101261492
NCBI-ProteinID:
XP_004251978
LinkDB
All DBs
Position
12:complement(8158423..8174324)
Genome browser
AA seq
980 aa
AA seq
DB search
MVESPTLKRRLEEENEAESASKRSRTCLHEVAIPSCYGSSNDESLHGTLSNPVYNGKMAK
IYPFKLDPFQEISVACLERKESVLVSAHTSAGKTAVAEYAIAMSFRDKQKVIYTSPLKAL
SNQKYRELSEEFSDVGLLTGDVSISPNASCLVMTTEVLRAMLYGGSEVLKEVAWVIFDEI
HYMKHRERGVVWEESIIFLPPAIKMVFLSATMSNPMEFAEWICNIHKQPCHVVYTDFRPT
PLQHYAFPKGGSGLYLVVDDKDQFREDNFLKLQETFTKKKPGSSNANASGRSGKGGNASG
VSDIYKIVKMIMARKFQPVIIFSFSRIDCEKHAMCMTKLDFNTEEEKKAVEQVFHSAVVC
LSEEDRNLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLIKALFATETFAMGLN
MPAKTVVFTSVKKWDGDAHRYIGSGEYIQMSGRAGRRGKDERGICIIMIDEKMEMDNLKD
MVSGKPDPLVSSFRLTYYSILNLLSRTEGQFTAEHVIKNSFHQFQYEKDLPDIGKRVSKL
EEEAALLDASGDAEVAGYYKLRLEIAQFEKKLMAEITRPERVLYFLLPGRLVKVREGGKD
WGWGVVVNVVKKPPAALGSLPATLSASCAAGYIVDTLLHCSLGSSENGSRPKPCPPRPGE
KCEMHVVPVQLPLISSLSKLRISVPSDLRPLEARQSIFLAVKELEKRFPEGLPKLNPVKD
MGIEDPEVVNMVNQIEELEKKFFSYQLHKSQNEHQLRSFQRKAEVNHEIQQLKSKMRESQ
LQKFRDELRNRSRVLKKLGHIDTDGVVQLKGQAACLIETGDELLVTELMFNGTFNDLNHH
QVAALASCFIPGDRSEEKIQLRDELEKPLQQLQDSARRIAEIQHECKLEIDVDEYVVASV
QPFLMDVIYCWSMGASFAEVIQMTDIFEGSITRLARRLDEFLNQLKAAAHAVGEVDLQNK
FGAASDSIRRGIMFANSLYL
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggtggagtctccgacattgaaacggagattagaggaggagaatgaagcagaatctgct
tcgaaaaggtcaagaacttgcttacacgaggtagcaattcccagttgttacggttcaagc
aatgatgaatcacttcatggaaccctttcaaatcctgtttataatggtaaaatggcgaaa
atttatccatttaagcttgacccatttcaggaaatctcagttgcgtgtttggagcgaaag
gaatcagttcttgtatctgcacatacttctgctggtaaaactgctgttgcagagtatgca
attgctatgtcttttagggataagcaaaaggtaatctatacttcacctttgaaagctttg
agtaatcagaaatacagggagttgagtgaggagttttctgatgtgggtttattgactgga
gatgtttcaatttcaccaaatgcgagttgtttggtaatgacgactgaagttctgagagct
atgctttatgggggttctgaggtattgaaagaggttgcttgggttatatttgatgaaata
cattacatgaaacatcgcgagagaggggttgtttgggaagagagtattatattcttgcca
ccagctattaagatggtttttctttcagcaacaatgtcaaatcctatggagtttgctgaa
tggatttgtaatattcataagcagccatgccatgtggtttacactgattttcgacccacc
cctttgcagcattatgcgttccctaagggtggttctggattgtatctcgttgttgatgac
aaagaccagtttagggaagacaatttcttgaaattacaggaaactttcaccaagaagaag
ccagggagctccaatgcaaatgctagtggaagaagtggaaaaggtggcaatgcttctggt
gtgtctgacatctacaaaattgtcaagatgatcatggcacggaagtttcagcctgtcatt
atattcagttttagtagaatagattgtgaaaaacatgcaatgtgtatgaccaaacttgat
tttaatactgaagaggaaaaaaaagccgtggagcaggtattccatagtgcagtggtgtgc
ttgagcgaggaagataggaacttgccagcaattgaattaatgttgccactgcttcagcga
gggattgctgttcaccactctggtttgcttcctgttatcaaggaacttgtggaacttctt
ttccaagaaggactaataaaggccctttttgccacggagacgtttgccatgggactaaat
atgcctgcaaaaacagtagtttttaccagtgtaaaaaaatgggatggtgatgctcatcgt
tacattggatctggtgagtatatacagatgagtggaagagcaggacgtcgtggcaaagac
gagcgcggtatttgcattatcatgattgatgagaagatggagatggataacctcaaggac
atggtttcgggcaaaccagatccattggtcagctcctttaggctgacttactactcaatt
ttgaatctattgagccgcactgaaggtcaatttaccgccgagcatgttatcaaaaactca
tttcaccagtttcagtatgagaaggatttacctgacatcgggaagagggtttccaagttg
gaagaagaagctgcattgcttgatgcctcaggagacgctgaggttgcaggatattataaa
ctaaggcttgagatagcccaatttgagaaaaaattgatggctgaaataacaaggcctgaa
agggttctgtattttcttcttcctggtaggctggttaaggtacgcgaaggtggaaaggat
tggggttggggtgttgtagtcaatgtggtgaagaagcctccagcagcattgggttctttg
cctgctaccctctctgcttcatgtgctgctggctatattgtggatacattacttcactgc
tctcttggttccagtgaaaatggttctcgaccaaaaccatgccctcctcgtcccggggaa
aagtgtgaaatgcatgttgttcctgttcagttacccttaatttcttctctcagcaagctt
agaatatctgttccttctgatcttcggcctttggaagcaagacagagtatttttcttgca
gtaaaggagcttgaaaaacggttccctgaaggcctcccaaagctcaaccctgtaaaggac
atgggcattgaagatcctgaagttgttaatatggtgaaccagattgaagaacttgagaag
aagttcttttcttatcaactgcataagtcacaaaatgaacatcagcttaggagtttccag
aggaaggctgaagtgaaccatgagattcaacagctcaagtcaaaaatgcgtgaatcacag
cttcaaaaatttcgggatgaacttaggaaccgctcccgagtcctcaaaaagctgggtcac
attgacactgacggtgttgtgcagttgaaggggcaggcagcctgcttgatagaaactgga
gacgaacttctcgtaactgaattgatgtttaatggtacattcaatgatcttaatcatcat
caagttgcggctctggcaagctgctttatcccaggtgatagatcagaggagaaaatacaa
ttaagagatgagcttgaaaaaccattgcaacagttacaagatagtgcaagaagaatagca
gagatacaacatgaatgcaagctggaaatagatgttgatgaatatgtggtggcatcagtt
caaccattcttaatggatgttatttactgttggtcaatgggtgcatcttttgcggaggtt
atacaaatgacagatatctttgaaggtagcatcacacggctggctagaaggcttgatgaa
tttttaaaccagttgaaagctgccgcacatgctgtgggagaagtagatttacagaacaaa
tttggtgcagcaagtgacagtattcggcgagggataatgtttgcaaattctctctacctg
tga
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