Solanum lycopersicum (tomato): 101261596
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Entry
101261596 CDS
T02665
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03015
mRNA surveillance pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101261596
09123 Folding, sorting and degradation
03018 RNA degradation
101261596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101261596
03041 Spliceosome [BR:
sly03041
]
101261596
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101261596
mRNA cycle factors
Stress granule specific factors
101261596
Spliceosome [BR:
sly03041
]
Complex C
Other components
Complex C specific factors
101261596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_7
RRM_Nup35
RRM_3
RRM_RdRP1_2
YflT
RRM_MARF1
SET_assoc
RBD_DGKtheta
PH_35
HPS3_C
Motif
Other DBs
NCBI-GeneID:
101261596
NCBI-ProteinID:
XP_004252758
UniProt:
A0A3Q7JBV0
LinkDB
All DBs
Position
12:66183104..66187538
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AA seq
666 aa
AA seq
DB search
MAQIQVQHQTPVAGGNGVAVAAAAAGAAAAVAAPGGGATSQFTSTSLYVGDLDFNITDSQ
LYDLFNHVGQVVSVRVCRDLSTRRSLGYGYVNYSNPSDAARAMELLNFTPVNGKSIRVMY
SHRDPTLRKSGSANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATDSNGQSKGYGFVQF
DNEESAQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFNNVYVKNLAESATDDEL
KNVFGEFGTITSAVVMRDADGKSKGFGFVNFENADDAAKAVEALNGKKFDEKEWYVGKAQ
KKSEREQELKNKFEQTAKEAVDKYQGVNLYVKNLDDTIDDEKLKELFAEFGTITSCKVMR
DPSGISRGSGFVAFSTPEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLQAQFSQLR
PVAMPPSLAPRMPIYPPGAPGIGQQLFYGQGPPALIPPQAGFGYQQQLVPGMRPGGAPMP
NFFMPMVQQGQQGQRPGGRRGAGPVQQSQQPMPLMQQQMMPRGRMYRYPPGRNVPDGPMP
GVAGGMLSVPYDMGGMLPRDAAAMGQPVPISTLATALANAPPEQQRTMLGESLYPLVDQL
EHEHAAKVTGMLLEMDQTEVLHLLESPEALKAKVSEAMDVLRNVQQATSSPADQLASLSL
NDNLVS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggcacagattcaggttcagcatcaaacaccagtggccggaggaaatggtgtggcggtt
gctgctgctgcagccggtgctgccgctgctgtagcggcaccaggtggaggagccacgagt
cagtttacgtccacgtcgttgtatgttggagacttggactttaacatcactgattcacag
ctctatgatctgttcaaccatgtcggtcaggttgtttctgttagggtttgtagggatctt
agtactcggagatctcttggatatggatatgttaactacagtaacccttccgatgctgca
agggcaatggagttgttgaacttcactcctgtgaatgggaagtccattagggtgatgtat
tctcatagggatcccactcttcgtaagagtggatcagcaaatatatttattaagaatttg
gacaagtcgattgacaacaaagcattacatgacaccttttcaagctttggcaacattctt
tcttgcaagatagctactgattctaatggtcagtcaaagggttatggttttgtacaattt
gacaacgaagaatctgctcaaggtgccatagataagttaaatggtatgttgatgaatgat
aagcaagtgtatgttggacactttcttcgcaaacaggaaagagaatctacaactggcatg
acaaaattcaacaatgtctatgtgaaaaatttggctgaatctgctaccgatgatgagttg
aagaatgtttttggtgagtttgggactattactagtgcagtagtgatgagggatgcagat
ggaaaatccaagggctttgggtttgtcaattttgagaatgcagatgatgctgctaaggct
gttgaagcattaaatggaaagaaatttgacgaaaaagaatggtatgttgggaaagcacag
aaaaaatctgaaagagagcaagaattgaaaaacaagtttgagcaaactgccaaggaggct
gttgataaataccaaggtgttaatttgtatgtaaaaaatttggatgacaccattgatgat
gaaaagctcaaggaactttttgccgagtttggtactattacctcatgcaaggttatgcgg
gatccaagtggaatcagcagggggtctgggtttgttgctttctctactcctgaagaagct
tccagagctctttctgagatgaacggcaaaatgatagtgagcaagccactctatgttgca
ctagcacagcggaaagaggagagaagggcaaagttgcaggcacaattttcacaactgcga
ccagtggcaatgcctccatcacttgctcctcgcatgccaatttaccctcctggtgctcct
gggattggacagcaactattttatgggcaaggaccccctgctctaattcctccccaggct
gggtttggctatcaacaacagcttgttcctggaatgcgccctggaggagcccctatgcca
aacttcttcatgccgatggtccagcaaggacaacagggtcagcgcccaggtggtcgacga
ggagcaggacctgtgcaacaatctcaacagcctatgcccttgatgcagcagcagatgatg
ccaagaggaagaatgtaccgctatccacctggacgcaatgtgccagatgggccaatgcca
ggtgttgctggtggtatgctctctgttccatatgatatgggtggtatgcttcctcgtgat
gctgctgctatgggacagcctgtgccgatctctacattggctactgcccttgcaaatgct
ccacctgagcagcagaggacgatgttgggtgaaagtttgtacccacttgttgatcagcta
gagcacgagcatgctgccaaggttacgggcatgctccttgaaatggaccagaccgaggtt
ttgcatctgcttgaatcaccggaggctttgaaggctaaagtttccgaggctatggatgtg
ctgaggaatgttcagcaggcaaccagcagcccggctgaccaacttgcatctctttccctt
aatgacaaccttgtttcttag
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