Solanum lycopersicum (tomato): 101261692
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Entry
101261692 CDS
T02665
Name
(RefSeq) rRNA biogenesis protein RRP5
KO
K14792
rRNA biogenesis protein RRP5
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sly03009
]
101261692
Ribosome biogenesis [BR:
sly03009
]
Eukaryotic type
90S particles
Other 90S particles
101261692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_RRP5
Spt6_S1
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
101261692
NCBI-ProteinID:
XP_010317858
LinkDB
All DBs
Position
3:complement(19990251..20029420)
Genome browser
AA seq
1897 aa
AA seq
DB search
MAPKSQSKKNLQSNGPIQLEEEVPDFPRGGASSLSRKELDEVRAEVDAEFEAEDRLLKKR
KKQHKLQKTNTEDDLGSLFGGGINGKLPRFANRITLKNISPGMKLWGVVSEVNEKDIVVS
LPGGLRGLVRASEALPPFVDDGAKLSEMDTNLLSSVYHAGQLVSCIVLHLDDDKKEVGKR
KIWLSLRLSLLHKNLTLDIVQEGMILSAYVKSAEDHGYIIHFGLPSFSGFMPKESENVEV
KNRSGQLVQGVVKRIDRTHKVVYLSSDPDVVSKCVTKDLKGISIDLLVPGMMVNASVRST
LENGIMLSFLTYFTGTADMFNLQQTFPSLNWKVDYPQNKKVNARILFIDPSTRAVGLTLN
PHLVHNKAPPALIKVGDIFDQSKVIRIDRSLGLLLEIPSSPVPTPAYVNVSDVADKEVKK
LEKSFKEGKLVRVRVLGFRRLEGLATGVLKTSAFEGSVFTHSDVKPGMIVKAKVIAVDSF
GAIVQFSSGVKALCPLRHMSEFEIVKPRKKFQVGAELVFRVLGCKSKRITITHKKTLVKS
KLEILGSYADATEGLTTHGWITKIENHGCFVRFYNGVQGFAPRSELGLDPGCEISSMYHV
EQVVKCRVTSSNPTSRRINLSFTRTSSRVFSTELVKPGNVVSGVVERVTPDAIVLDVTSQ
GHFKGTVSPQHLADHSGHAALMKSALRPGYEFDQLLVLDVEGSNLILSAKHSLVTSAQQL
PLDVNQVHLNSVLHGYVCNIIESGIFIRYLGRLTGFSPRNKATDDRRSSLSEVYQIGQSV
RTNIIDVSSETSRITVSLKQSICCSTDASFIQEYFLVEEKIAKLQSVDSGSSDLRWVEQF
NVGSTVKGKVHEIKEFGVVVSFQKYDDVFGFISHYQLSGLPVETGSSIRTAVLDVSRIER
LVDLSLKPAFVNKSKKETTNGQAQKKRKMETLEELEVNQTVNAVVEIVKENYLVVSLPSY
DNALGYASRADYNTQNLPPKSFTNGESVIATVMALPSPSTSGRLLLLLKSISEAIETSNS
KRAKRKSGYNVGSLVQAEITEIRPIELRLKFGSSFHGRVHITEASDDNYAEAPFSNFRFG
QTLTARIISKLNMSESVKRGYQWELSIKPSTLTGSDEIEPDKKISYSTGQLVSGFVYKVD
KEWAWLTISRDVKAQLYILNSSSEPSELDEFQERFSVGRAFSGYVLRCNKEKKLVRIISH
PLLVDPETACQGDGPTDHSSESVAFHIREGSVLGGRISKILPGVGGLLVQIDPHLYGKVH
FTELTDPGVADPLSGYHEGQFVKCKVLEIAQSGKGTVHIDLSLRSISHKTQKEKLSAHND
TVNFPVLVEKIEDLRPNMMVQAYVKNVSPKGCFVILSRKVDAKVLLSNLSDGYVENIEKG
FPVGKLVIGRVVSVEPLSKRVEITLRTSSAVGAPKSDKDALSNLTVGDVISGRIKRVEPY
GLFITVDHTNLVGLCHVSEISDDHVDNIDSRHKAGDRVTAKILKVDKERHRISLGMKNSY
INDATSGETYARPSSGHAVNGDALPIGIQSTSSPESSSQGREDLDDESVDGKDLFLAEVE
SRASIPPLEVPLDDTENLDMGDVVNQNSGGATTNFGTSDDKNQKHVAKKAKRLREQEIRA
AEERLLEKDIPRDEDEFEKLVRSSPNSSFVWIKYMAFVLSLADVEKARSIAERALRTINV
REELEKLNVWVAFFNLENEYGNPPEEAVAKVFQRALQYCDPKKVHLALLGMYERTEQHKL
TDELLNKMVKKFKHSCKVWLRRTQWLLKQKQDGVQSVVNRALLSLPAHKHINFITQTAIL
EFKCGVPDRGRSLFEKMLREYPKRTDLWSVYLDQEIRLGNADVIRALFERAITLSLPPKK
MKFLFKKYLEYEKMHGDDERMEVVKRKAMEYVESSLT
NT seq
5694 nt
NT seq
+upstream
nt +downstream
nt
atggcacccaaatcccaaagcaaaaaaaatttacaatcaaacggtcccattcagcttgaa
gaggaagttcctgacttccctagaggtggggcatcttctttgagcaggaaagagttggat
gaagttcgagctgaggtggatgcagagtttgaggctgaagacagattattgaagaagagg
aaaaaacaacacaagctccaaaagactaatacagaagatgatttaggttcccttttcggc
ggtggtatcaatggaaaattgccaaggttcgccaacaggatcactttaaagaatatatct
cctggaatgaagctctggggagtagtttctgaagtaaatgagaaagatattgttgtcagt
ctcccaggaggcttgcgggggttagttcgagcttctgaagcacttcctccctttgtagac
gatggagcaaaactgtcggagatggacactaatcttctttctagtgtatatcacgctggg
cagctggtttcttgcatcgtcttgcacttggatgacgataagaaagaagtagggaagaga
aagatttggctttccttgcgtctctctttattgcacaagaacttaactcttgacattgtt
caagaaggaatgattcttagtgcatacgtgaaaagcgcggaagaccatggttatataatt
cattttgggctgccttccttctcaggatttatgccaaaagaatcagaaaatgtggaagtc
aagaatagaagtgggcagctggtacagggggttgttaaacgtattgatagaacacataaa
gttgtttatttgagttctgatcctgatgttgtctcaaaatgtgtgaccaaggatcttaag
ggtatctcaattgatcttctcgttccaggcatgatggttaatgctagtgtgcgttcaact
cttgaaaatggaattatgttatcattcctcacgtactttaccggaacagctgacatgttc
aatttgcagcaaactttcccctctttgaattggaaagttgattatccacaaaataaaaag
gttaatgctcggatactatttattgatccctcaactagagctgttggtttgaccttgaat
cctcacctggttcataacaaggctcctcctgcacttatcaaggttggagatatttttgat
caatcaaaagtgatcaggattgataggagtttgggtcttttgctggaaatcccctcttct
cctgttccaactccagcatatgttaatgtatctgatgttgctgataaggaagtgaaaaag
ctggagaaaagtttcaaggaagggaaacttgttcgtgtcagggtccttgggtttaggcgt
ctagaaggacttgctactggggttttaaagaccagtgcatttgaagggtcagttttcact
cattcagatgtcaagcctgggatgattgtaaaagctaaagtcattgcagtagacagtttc
ggtgccatagtacaattttccagtggtgtgaaagcactttgtcctcttcgtcatatgtct
gaatttgaaattgtaaaacccaggaaaaaattccaggttggagcagaattagtctttcgt
gttcttggttgcaagtcaaagagaatcactattacacacaagaagacactagttaaatca
aaacttgaaattcttggttcttatgctgatgctactgaaggactaacaacgcatggatgg
ataacaaagattgaaaaccatggttgctttgtccggttttacaatggagtacaaggattt
gcccctagatctgaacttggactagatccggggtgtgaaataagttccatgtatcacgtt
gaacaagtagttaaatgtagagttaccagttctaatccgacttcacgccgtattaacctc
agtttcacaagaacatcctcaagagtattcagcactgaactcgttaaaccaggaaatgtt
gtttctggagtggttgaacgagtgactccggatgcaatcgtcctagatgttacttctcag
ggtcattttaagggcacagtctcacctcaacatttggctgatcacagtggccatgctgcg
ttgatgaagtccgccttgaggcctggttatgagtttgatcagcttttggttcttgacgtt
gagggaagcaatttaatactctctgcaaaacattctcttgtgacctcagctcagcaactt
ccgctggatgtcaatcaagtccatcttaactctgtgctgcatgggtatgtttgtaatata
attgaaagtggcatcttcattcgctaccttgggcgcttgactgggttttctccaagaaac
aaggctactgatgacagaagatccagtttgtctgaagtttaccagattggccaatctgtt
cgcactaacattattgatgtcagcagtgaaacaagtcgaattacagtttctttgaagcag
tccatttgctgttcaacagatgcatcctttattcaagaatactttcttgtggaggagaag
attgccaagctgcagtcggtggactctggaagttctgacttgagatgggtggaacaattt
aatgttggtagcactgtgaagggaaaagttcatgaaataaaggaatttggtgttgtagta
agctttcagaaatatgacgacgtttttggttttatttcccactatcagttaagtggactc
cctgtggagaccggctcaagtattcgcacagcagtacttgatgtttccaggatagaacgc
ctggtggatctgtctttgaagccagcttttgtgaataaatcaaagaaagagaccactaat
ggtcaagcccagaagaaacgcaaaatggaaacgctagaagaattggaagtaaatcaaact
gtaaatgcggttgtggagattgttaaagaaaattacttggttgtttcactgccatcatac
gataacgctcttggatatgcatcaagagctgattacaatactcaaaatctccctcctaaa
tcatttaccaatggagaaagtgtcattgcaactgttatggcccttccttctccttcaaca
agtgggagattgctgctgctgcttaagtctatcagtgaagctattgaaacgtcaaattcc
aagagggctaaaaggaaatctggttataatgttgggtcgctagttcaggcagagattact
gaaataaggccaattgaactgagactaaaatttgggtcaagtttccatgggagggtgcac
ataacagaggcatcagatgacaattatgctgaagctccatttagtaacttcagatttggg
cagactcttactgcaaggatcatttcaaagctcaatatgtcagaaagtgttaagagaggc
tatcagtgggagctatccattaaaccatccacacttacaggatctgatgaaattgaaccc
gataagaaaatcagttattcaactggccagctcgtttctggctttgtgtacaaagttgac
aaagaatgggcttggctaacgatatcccgagatgttaaggcccagctctacatcttaaat
agctcaagtgaacctagtgagctagatgaatttcaggaaaggttctctgtcggcagggcc
ttctctggttatgttttacgttgtaacaaggagaagaagttagtgcgcataatttcacat
ccactgttggttgatccagaaactgcctgtcaaggagatggtcccacagatcattcaagt
gaaagtgtggcatttcatattcgtgaaggcagtgttttgggtggcaggatttccaaaatc
cttccaggtgttggtggattgcttgttcagattgatcctcacctatatggtaaggttcat
ttcactgaactgacagatccaggggtagccgatcctctgtctggatatcatgagggacag
ttcgtaaagtgcaaagtgctggagattgctcagtcaggcaagggaactgttcatattgat
ctttcgctgcggtctatttcacacaaaacccagaaggagaaactctctgcacacaatgac
acagtgaattttcctgtattggtggagaaaattgaggaccttcgtccaaatatgatggtg
caggcttatgtgaaaaatgtatcaccgaaaggatgtttcgtaatactttcgcgcaaagtt
gatgcgaaagttctcctgtcaaacttgtctgatggctatgtggaaaatatagagaaagga
ttccctgttggtaaacttgtcattggaagggtggtttccgtggagcccttgtctaagcga
gttgaaatcactctaaggacatcaagtgcagttggtgctcccaagtctgataaagatgct
ctaagtaatttgactgttggtgatgtcatatctggtagaatcaagcgagttgaaccatat
ggattgtttatcacagttgatcacacaaacttggttgggttgtgccatgtatcagaaatc
tctgacgatcatgtcgacaatattgactctagacataaagctggggatagagtgacggca
aagattttgaaggtggataaggaaagacatcgaatttcactagggatgaagaattcatat
attaatgatgctacaagtggtgaaacatatgcaaggccgagttctggtcatgcagtgaat
ggagatgctcttcccattggtattcaatcaacttcatcacccgagagtagctctcaaggc
cgggaggatcttgatgatgaatctgttgatgggaaggacctgttccttgctgaagttgaa
tctcgtgcatccataccaccactggaggtcccacttgatgatacagaaaatttggatatg
ggtgatgtagtcaatcaaaactcaggtggtgctactaccaatttcggtacttcagatgac
aagaaccagaaacatgtagcaaaaaaagctaaaagattgagggaacaagaaattagagct
gctgaggaaagattactggaaaaagatattccaagggatgaagatgagtttgagaaatta
gttagaagttccccaaatagcagctttgtctggataaaatacatggcatttgtgctgtct
ttggctgatgttgagaaggcacgatcgattgcagaacgggctttgaggacaataaacgtg
cgagaagagttagaaaagctgaatgtttgggttgccttcttcaatttagaaaacgagtat
ggaaatcccccagaggaagctgttgcaaaagtattccaaagagcattgcagtattgtgat
cccaaaaaagtgcatttggccttgttaggaatgtatgagaggactgagcaacacaaactc
acagatgaacttcttaacaagatggttaagaagttcaagcattcgtgcaaggtttggctt
aggcggactcagtggctattgaaacaaaaacaagatggagtccagtcagtggtgaatcgt
gctttgctaagtcttcctgcgcacaaacatattaactttatcacacagacagctattcta
gagttcaagtgtggagttcctgacaggggtcgctccttgtttgagaagatgcttcgtgaa
tatccgaagagaactgatctgtggagcgtatatcttgatcaggagattcgtctgggaaat
gcagatgtgatccgtgccttatttgaaagggcaattactctcagccttccacccaaaaag
atgaagttcctctttaagaagtatcttgagtacgaaaagatgcatggtgatgatgaacga
atggaggttgtgaaaaggaaagcaatggaatatgttgagagcagtcttacttga
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integrated database retrieval system
