Solanum lycopersicum (tomato): 101261705
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Entry
101261705 CDS
T02665
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101261705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101261705
03012 Translation factors [BR:
sly03012
]
101261705
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101261705
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101261705
Translation factors [BR:
sly03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101261705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
Dicer_dimer
ATPase
AAA_11
T2SSE
NACHT
PhoH
Motif
Other DBs
NCBI-GeneID:
101261705
NCBI-ProteinID:
XP_004237199
UniProt:
A0A3Q7FZ11
LinkDB
All DBs
Position
4:1780065..1795995
Genome browser
AA seq
1183 aa
AA seq
DB search
MSLYPLQFFTVSSHYRNLRTSSISPPSLTMKDRPLSSCGAVYVPPHQRLRSVITVPSAVS
PQPGSLRPTAIDQKRNPNIFKSYPCLPPQQQTVRLQHKRSSQFDEVSEEGGDIELTPYQG
AVASDNAEIWKWKLTALLQNNDIQEVLSREKKDRRDYEQIAALASKMGLYSNLYSKVIVV
SKLPLPNYRFDLDDKRPQREVILPPGLPRRVDVFLGEYLSRKPRSTDVLSRSSSNGSIAT
DEGLFEQSEALPQSKASMKKIHWERSMQMQTEQQTWQESPEGRKMLEFRCSLPAYKEKDA
ILSAISQNQVVIVSGETGCGKTTQIPQFILESEIEYIRGDMCSIICTQPRRISVMAVSER
VAAERGELLGETVGYKVRLEGVKGRDTHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHE
RGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFNGAPLVHIPGFTYPVHTHFL
ENILEMSGYRLTPDNQIDDYGQERTWKMNKQAPRKRKSQIASAVEDTLRSADFQEFSPET
QESLSCWNPDCIGFNFIEYILCHICENERPGAVLVFMTGWDDISSLKDKLQSHPILGNTS
RVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNIAETSITIDDVVFVIDCGKAKETSY
DALNNTPRLLPSWISKVSARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPEILRTPLQ
SLCLQIKSLKLGSISEFLKRALQSPELLAVQNAVEYLKIIGALDENENLTVLGRYLTMLP
MEPKLGKMLILGAILNCLDPILTIVAGLSVRDPFLTPLDKKDLADAAKAHFSRDFSDHLA
LVRAYEGWRDAERDLAGYEYCWKNFLSAQSMKAIDSLRKEFYSLLNDTGLVDSNITMYNS
WSYDEHLLRAIICYGLYPGICSVLHNEKSFSLKTMEDGQVLLHSNSVNARDSRIPYPWLV
FNEKIKVNSVFLRDSTAISDSVLLLFGGTISKGEVDGHLKMLGGYLEFFMNPTIAEMYRS
LRRELDELIHTKLLNPRMDVHSYHELLSAIRLLISEDQCGGRFVFSHQILLPSKPCAGAP
TPAPTSRIESGPGGDNAKSQLQTLLNRAGYATPTYKSLQLNNNQFRATVEFNGMQIMGRP
CNNKKQAEKDAAAEALEWLLEGHRAGPDYIEQMSQFLKKSKKA
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgagtctatatcctctccaatttttcacagtcagttcacattaccgaaaccttagaact
tccagcatttcaccaccgtcgttaacgatgaaggaccggccgctgtcatcatgcggtgct
gtttacgtccctccacatcaacgcctccgttcagtaatcactgttccctctgctgtttct
ccacaacctggcagcttacgtcctacagcaattgatcaaaaacgtaatcctaacattttc
aagtcctatccttgccttccgccgcagcagcaaacagtgcgactacaacataagagaagt
tcacaatttgatgaggtttctgaggaagggggtgatattgagcttacgccatatcagggt
gctgtcgcatctgataacgctgaaatatggaaatggaagctcactgctctgctacaaaac
aatgatatacaagaggtgctttcaagggagaaaaaagataggcgtgattatgagcaaata
gcagctttagcaagcaaaatgggtttatatagcaacctatattcaaaagtaattgttgtc
agcaagcttccattacctaactacaggtttgatttggatgataagcgtcctcagagagag
gtgatcctgcctccgggtttacctagacgagttgatgtttttcttggagaatacttgtct
cgtaagccaagaagcacagatgtactttcacgatcaagcagtaatggcagtatagctact
gatgagggtctatttgagcagtcagaggcactccctcaaagtaaggcttccatgaagaaa
atccattgggaaaggagtatgcaaatgcagacagagcagcaaacttggcaggaatcacct
gagggtaggaagatgctggaatttcgttgtagtctacctgcgtataaggaaaaagacgca
atattaagtgccatttcacagaaccaggtggttattgtctctggtgaaactggctgtggg
aagaccacacagattccgcaatttattttagagtctgaaattgagtatattcgtggagac
atgtgtagtatcatatgtacacagccaagaagaatatctgttatggcagtatctgaaaga
gttgctgcggagagaggggagttgttgggtgaaacagttggatataaagttagactagaa
ggtgttaaaggaagggacactcacctcctcttctgtacaactggtatcttgttaagaagg
ctactggttgatagaaatctgaagggaatcacacatgtaattgtggacgagattcatgaa
cgtggaatgaacgaagacttcctgctaatagttctgaaggatttactcccacgccggcca
gaattaaggttgatcttgatgagtgccaccttagacgcagagcttttctcttcatacttt
aatggggctccactagtccacattcctggatttacatatccagttcacactcatttcctg
gaaaatattctggagatgtcggggtacaggttgacgccggacaatcagattgatgattat
gggcaggagagaacgtggaaaatgaacaaacaagctccaagaaaaaggaagagccagatt
gcttctgctgttgaggacaccctcagatctgctgatttccaagaatttagccctgagaca
caagagtccttgtcatgttggaatcctgattgtataggcttcaattttatagaatatatt
ctatgccatatttgtgaaaatgaaaggcccggtgctgttttagtttttatgactggttgg
gatgacataagttctctgaaggataagctacagtctcatcctatcttggggaatacaagc
cgtgttttattgctggcatgccatggttctatggctagttcagagcagaggttaatattt
gacaagcctgaagatggagtgaggaagattgtgttggctacaaatattgctgagaccagt
atcacgattgatgatgtagtgtttgttattgactgtggcaaggcaaaagagacgtcatat
gatgcacttaataatactcctcgtttgcttccttcttggatttcaaaggtttcagctcga
caaagaaggggacgagctggacgtgttcagccaggagaatgctatcatctttatcccaga
tgtgtatatgatgcttttgcagattatcaattaccagaaattctgaggactcctttgcaa
tccctttgtttgcaaattaaaagtttaaaacttggtagcatttctgagttcctcaagagg
gctttgcaatctcccgaattattagcggttcagaatgctgttgagtatctgaaaatcatt
ggggctttagatgagaatgaaaatttgactgttctaggacgttacttaacaatgcttcca
atggagcctaaactcgggaaaatgcttatacttggagcaattttgaattgtttggacccg
atattaactattgttgctggtcttagtgtccgagatcccttcttgacaccacttgacaag
aaagatcttgcagatgctgccaaggctcacttttcacgcgattttagtgaccatcttgct
cttgtccgagcatatgagggttggagggatgctgaaagagacctagctgggtatgagtat
tgctggaagaattttctgtctgcacagtctatgaaagctattgattctcttcgcaaggag
ttctactctttgttgaacgacactggtcttgttgacagcaacattaccatgtataattct
tggagttatgatgagcatctccttcgagcgattatctgttatgggttgtatcctggaatc
tgttctgtactgcataatgaaaagtcattttcattgaaaacaatggaagatggtcaggtg
ttattacactcgaactccgttaatgcccgggactccaggataccatatccttggctggtg
ttcaatgaaaagatcaaagtaaactctgtctttctacgggattcaacagctatctccgac
tcagtgctgcttctatttggaggaaccatctcaaaaggggaagtggacggtcacttgaaa
atgttgggtggatacttagagttctttatgaaccctactatagcagaaatgtacagaagt
ctaagaagagagcttgatgagttaattcacactaaacttctgaatcctaggatggatgta
catagttatcatgaacttctgtcagcaatacggttgcttatctcagaggatcaatgcggt
ggcagattcgtttttagtcatcagattttacttccttctaagccatgtgctggagcacca
acaccagctccaacgtcaaggatagaaagtggtccaggaggtgacaacgctaagtctcag
ctacagacattgctgaatcgagcaggatatgcaacaccaacctacaagtctttgcaactc
aataacaatcagtttcgagcaactgtggagttcaacggaatgcagataatgggaagacct
tgcaacaacaagaagcaagctgaaaaagatgcagcagctgaggctctggagtggttgttg
gaagggcaccgtgcaggtcctgattacattgagcagatgtctcagtttctgaaaaagagc
aaaaaggcatag
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integrated database retrieval system
