Solanum lycopersicum (tomato): 101262122
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Entry
101262122 CDS
T02665
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101262122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sly03400
]
101262122
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
101262122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
101262122
NCBI-ProteinID:
XP_004240884
UniProt:
A0A3Q7HN77
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All DBs
Position
6:complement(35703667..35710728)
Genome browser
AA seq
1287 aa
AA seq
DB search
MKRHIHYNAHPIDPHPFEAFWYGSWQAVERLRINMGTITTHVLVDGEVIEENIPVTNLRM
RSRKATLSDCACFLRPGLEVCVLSIPYQGENSGDEKDVKPVWIDGKIRSIERKPHELTCT
CKFHVSVYVTQGPPPILKKTLSKEIKMLPIDQIAVLQKLEPKPCENKRYRWSSSEDCNSL
QTFKLFIGKFSSDLTWLMTASVLKEATFDVRSIHNQIVYEIVDDDLVRKETNSNQHSYSV
NFKLEGGVQTTTVIQFNRDIPDINSTSDLSESGPLVLYDLMGPRRSKRRFVQPERYYGCD
DDMAEFDVEMTRLVGGRRKVEYEELPLALSIQADHAYRTGEIEEISSSYKRELFGGNIRS
HEKRSSESSSGWRNALKSDVNKLADKKSVTADRQHQLAIVPLHPPSGTGLTVHEQVPLDV
DVPEHLSAEIGEIVSRYIHFNSSSTSHDRKASKMNFTKPEARRWGQVKISKLKFMGLDRR
GGTLGSHKKYKRNTTKKDSIYDIRSFKKGSVAANVYKELIRRCMANIDATLNKEQPPIID
QWKEFQSTKSSQRESGDHLAMNRDEEVSEIDMLWKEMELALASCYLLDDSEDSHAQYASN
VRIGAEIRGEVCRHDYRLNEEIGIICRLCGFVSTEIKDVPPPFMPSSNHNSSKEQRTEEA
TDHKQDDDGLDTLSIPVSSRAPSSSGGGEGNVWALIPDLGNKLRVHQKRAFEFLWKNIAG
SIVPAEMQPESKERGGCVISHTPGAGKTLLIISFLVSYLKLFPGSRPLVLAPKTTLYTWY
KEVLKWKIPVPVYQIHGGQTFKGEVLREKVKLCPGLPRNQDVMHVLDCLEKMQMWLSQPS
VLLMGYTSFLTLTREDSPYAHRKYMAQVLRQCPGLLILDEGHNPRSTKSRLRKGLMKVNT
RLRILLSGTLFQNNFGEYFNTLTLARPTFVDEVLKELDPKYKNKNKGASRFSLENRARKM
FIDKISTVIDSDIPKKRKEGLNILKKLTGGFIDVHDGGTSDNLPGLQCYTLMMKSTTLQQ
EILVKLQNQRPIYKGFPLELELLITLGAIHPWLIRTTACSSQYFKEEELEALQKFKFDLK
LGSKVKFVMSLIPRCLLRREKVLIFCHNIAPINLFLEIFERFYGWRKGIEVLVLQGDIEL
FQRGRIMDLFEEPGGPSKVMLASITTCAEGISLTAASRVILLDSEWNPSKSKQAIARAFR
PGQDKVVYVYQLLATGTLEEEKYKRTTWKEWVSSMIFSEDLVEDPSHWQAPKIEDELLRE
IVEEDRATLFHAIMKNEKASNMGSLQE
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggcatatacattacaatgctcatccaattgatccacacccttttgaggcattc
tggtacggatcttggcaagctgtggagcgcctaaggatcaatatggggaccataactact
catgttctagttgatggggaggtgattgaggagaatattccggtaacaaatcttcgaatg
aggtctagaaaagctactttatctgattgtgcctgcttcttacgacctggacttgaggtt
tgtgtgctttcaatcccttaccaaggagaaaattcaggggatgagaaagatgtcaagcct
gtgtggattgatggaaaaataagatctatagagaggaagcctcatgagctcacttgtact
tgcaaatttcatgtcagcgtttatgtcactcaaggccctcctcccattttgaagaaaacc
ctaagtaaagagataaagatgttgcccattgatcagattgcagttctccaaaaacttgaa
cctaaaccttgtgaaaacaaacgctaccgttggagttcttctgaggattgcaattcgttg
cagacttttaaactattcataggaaaattctcctctgacctgacatggttaatgactgca
tctgtcctgaaagaagctacatttgatgtgagatcgatacataaccagattgtctatgag
attgtggatgatgatctagtcagaaaagaaacaaattctaaccaacattcttactcagtg
aatttcaagttagaaggcggagttcaaacaaccactgttattcaattcaatagggatatc
ccagatataaattctaccagtgaccttagtgaatccgggcctctagttctgtatgatcta
atgggcccacgaaggtcaaagcgtcgatttgtacagccagagcgttattatggatgtgat
gatgatatggcagaatttgatgttgagatgacaaggttagttgggggtaggagaaaagtg
gagtatgaagaactaccacttgcactttctattcaggctgatcatgcttatcgaactggt
gaaattgaagaaatttccagctcttacaagagagagttgtttggaggaaatatcagatct
catgagaaaaggtcctctgaaagttcatctggatggagaaatgcactcaaatcagatgta
aataagcttgcagacaagaaatcagttacagctgaccgtcaacatcaacttgctattgtt
cccctgcatcctccttcaggaactggtttaacagtccatgagcaggttccacttgatgtt
gatgttcctgaacatttgtctgcagagattggtgaaatagtttccagatatattcatttc
aatagttcttcaacatcgcatgataggaaagcttccaaaatgaacttcacaaaaccagaa
gctagacgctggggtcaagtcaaaatttcaaagttaaagttcatgggacttgatcgaaga
ggtgggacattaggttcacataagaaatacaaacgaaatactacaaagaaggatagtatt
tatgatataagatcattcaaaaagggttctgtagcggctaatgtgtacaaggaattgatc
agaaggtgcatggcgaacattgatgccacacttaataaagaacaaccaccaataattgat
cagtggaaagagtttcagtcaacaaaatctagccagagagagtcgggtgatcatctcgca
atgaatagggacgaagaggtttcagaaattgatatgttatggaaggagatggaactagcc
ttggcatcatgttatcttctagatgacagtgaggattcccatgctcaatatgcaagtaat
gtcaggataggagctgaaatacgtggagaagtttgtcgacatgattatcgactgaatgaa
gaaatcggaattatttgccggctatgtggattcgttagcaccgaaataaaggatgttcca
ccaccttttatgccttcgtcaaaccacaattccagcaaggagcaaagaactgaagaagct
acagatcacaagcaggatgatgatggccttgatactttgtccattcctgtttcttccaga
gcaccctcatcatcaggaggaggggaaggaaatgtctgggcattgatacctgatctagga
aataaattacgggtacaccaaaagagagcctttgagtttctgtggaaaaatattgctgga
tccatagtacctgcagaaatgcaaccagagagcaaagagagaggtggctgtgttatttct
catactccaggagctgggaaaaccttacttattatttccttccttgtaagctacctgaag
ttatttcctgggtcacgaccgttggtccttgctcccaagacaacactctacacctggtac
aaagaagtactgaagtggaagattcctgtgccagtctaccaaattcatggtggtcaaacc
tttaagggagaggttctaagggaaaaggtgaaattatgtcctggtcttcctcgcaaccaa
gatgtcatgcatgtcttggactgccttgagaaaatgcagatgtggctttcgcaaccaagt
gttctcctcatgggttacacctctttcttaacactgacacgggaagattcaccttatgcg
cataggaaatatatggctcaggtgttgcggcagtgtccagggctactaatacttgatgaa
gggcacaacccaagaagtacaaaatcccggttaagaaagggtctaatgaaggtcaataca
cggcttaggattttactttctggtacattatttcagaataattttggagagtatttcaat
acacttaccttagcaaggccaacttttgttgatgaggtcttgaaggagcttgatcccaag
tacaagaacaaaaacaaaggtgcatcgcgcttttcattggaaaatcgagcaagaaagatg
tttattgataaaatttcaactgtcattgattcagacatccccaagaaaaggaaagaaggc
ctaaacatattgaagaaactaacaggtggattcatagatgtgcatgatggtggaacatct
gataaccttcctggtttacaatgttacaccttgatgatgaaatcaactactcttcaacaa
gagatcttggtgaagcttcaaaatcaaaggcccatctataaaggatttcctctggagtta
gagctgttgattacccttggtgcaatccatccttggttgatcagaacgacagcatgttct
agccagtacttcaaggaagaggagctggaggctctccagaaattcaagtttgatctgaag
ctgggttcgaaagtcaaatttgtgatgagcctaattcctcgttgtctcctcaggagagaa
aaggttttgatattttgccacaatattgctccaattaatctttttctggagatatttgag
aggttctatgggtggagaaagggcattgaagtactggtgcttcaaggtgacattgagctt
tttcaaagaggaaggataatggatctatttgaggagccaggtggaccatcaaaggttatg
ttggcatccattacaacttgtgcagaaggcattagcttgaccgcagcatcacgtgtaata
ttactggattcggagtggaatccttccaagagcaagcaagccattgcacgggcttttcgt
cctggtcaggacaaagttgtctatgtctaccagcttctggcaacgggcacactggaagag
gagaaatacaaaagaacaacatggaaagaatgggtatcaagcatgatattcagtgaagac
cttgtggaggacccttctcactggcaagcaccaaaaattgaagatgaattattgagagaa
atcgttgaggaggatcgagctacattattccatgccattatgaaaaatgagaaggcttct
aacatgggaagtctgcaggaatga
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