Solanum lycopersicum (tomato): 101262619
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Entry
101262619 CDS
T02665
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101262619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101262619
03041 Spliceosome [BR:
sly03041
]
101262619
03009 Ribosome biogenesis [BR:
sly03009
]
101262619
03016 Transfer RNA biogenesis [BR:
sly03016
]
101262619
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101262619
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101262619
Spliceosome [BR:
sly03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101262619
Complex C
U4/U6.U5 tri-SnRNP related factors
101262619
Ribosome biogenesis [BR:
sly03009
]
Eukaryotic type
Pre-60S particles
Helicases
101262619
Transfer RNA biogenesis [BR:
sly03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101262619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
101262619
NCBI-ProteinID:
XP_004240121
UniProt:
A0A3Q7GMJ5
LinkDB
All DBs
Position
5:62184615..62193183
Genome browser
AA seq
996 aa
AA seq
DB search
MESSPAAVKRKEPEVNSDEKEVPELNSSSKRANLTRTCVHEVAVPSSYTSTNDESVHGTL
SNPCYNGEMAKMYPFKLDPFQEVSVACLERNESILVSAHTSAGKTAVAEYAIAMSFRDKQ
RVIYTSPLKALSNQKYRELSHEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVL
KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICNIHKQP
CHVVYTDFRPTPLQHYMFPMGGSGLYLVIDENEQFREVNFLKMQDSFAKKKVGDGSNNAN
ARVRGRIAKGGSTSGGVSDICKIVKMIMERKFQPVIVFSFSRRECEQHAMSMPKLDFNTE
EEKEVVKEVFHNAVDCLSEEDRNLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEG
LIKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGI
CIIMIDEKMEMDSIKDMVLGKPAPLVSTFRLSYYTILNLLSHAQGQFTAEHVIKHSFHQF
QHEKALPDIGKRVSKLEKEAAKLDASGEGEVAEYHKLKLEIAQREKKLMAEITRPERVLH
FLLPGRLVKVWEGGKDWGWGVVVNVVKKPPAASGSMPAALSASRSTGYIVDTLLHCSLGS
GENGSQPKPCPPRPGEKGEMHVVPVQLPLISSLSKLRISVPADLRPLEARQSILLAVQEL
QKRFPQGLPKLNPVKDMGFEDPEFVDIVNQIEELEKKLFAHPLHKSQDEHQLKSFQKKAE
VNHEIQQLKSKMRDSQLQKFRDELKNRSQVLKKLGHIDADGVVLLKGRAACLIDTGDELL
VTELMLNGTFNDLDHHQTAALASCFIPGDKTNEQIHLRAELTKPLQQLQDTARRIAEIQR
ECKLEINIEEYVEASVRPFLMDVIYCWSKGASFAEVIQMTDIFEGSIIRLVRRLDEFLNQ
LKGAAHAAGEVDLENKFAAASESLRRGIMFANSLYL
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggagtcttctccggctgcggtgaaacggaaagaaccggaggtgaattccgacgagaag
gaagtcccggagctaaattcatcttccaagagagcaaatttaactagaacctgcgtgcac
gaggtagcagttccatctagttacacttcaacaaatgacgaatcagttcacggaactctt
tcaaatccttgttacaatggtgaaatggcgaaaatgtacccattcaagctcgacccattt
caggaagtgtcagttgcatgcttggaacgaaatgaatcaatccttgtatcagcacatacc
tccgctgggaaaactgctgttgctgagtacgcgattgcaatgtcgtttagggataaacaa
agggttatttacacttcgcctttgaaagctttgagtaatcagaagtacagagagttaagt
catgagttttctgatgttggtttgatgactggtgatgttacgctttcaccaaatgcgagt
tgtttggtgatgacgacggagattttaaggggtatgttgtataggggttctgaggtgtta
aaggaagttgcttgggttatatttgatgagatacattacatgaaggatcgtgaaagaggg
gttgtttgggaagagagtattatattcttgccaccagctatcaagatggtttttctttca
gcaactatgtctaatgctactcagtttgctgaatggatatgcaatattcataaacagcca
tgtcatgtggtctacactgattttcggcctaccccgttgcagcattatatgtttccaatg
ggcggttctggattgtatcttgttattgatgaaaatgagcagtttagggaggtcaatttt
ttgaagatgcaggacagttttgcaaagaagaaagtgggagatggaagcaacaatgcaaat
gctagggttagaggtagaattgctaaaggtggctctacttctgggggtgtctcagatatc
tgcaaaattgtcaagatgatcatggaacggaagtttcagccagtcattgtgttcagtttt
agtagaagagaatgtgaacaacatgcaatgtctatgcccaaacttgattttaatactgaa
gaggagaaggaagtagtgaaggaggttttccataatgcagtggattgcttgagcgaggaa
gatagaaacttaccagctattgaattgatgttgcccctacttcagcgtgggattgctgtt
caccactctggcctgcttcctgttataaaggaacttgtggaacttctcttccaagaagga
ctcatcaaggctctttttgcaacagagactttcgccatggggctaaacatgcctgcaaaa
actgttgtctttaccagtgtaaagaaatgggatggtgatagtcatcgttacattggatct
ggtgagtatatacagatgagtggaagagcaggacgtcgtggaaaagatgatcgtggtatt
tgtattatcatgattgatgagaagatggagatggatagcatcaaggacatggttttgggt
aaaccagctccattagtcagcacgtttaggttgagttactatacaattctgaatttattg
agtcatgctcaaggccaatttactgccgagcatgttatcaaacactcattccaccagttt
cagcatgagaaggcgttacctgacattggaaagagggtctctaagctggaaaaagaagct
gcaaagcttgatgcatcaggggagggtgaggttgcagaatatcataaactaaagcttgag
attgcacaacgcgaaaaaaaactgatggctgaaataacacggcctgaaagggttctccat
tttcttcttcccggtaggctggtcaaggtatgggaaggtggaaaagattggggttggggt
gttgtagtcaatgtggtaaaaaaacctccagctgcgtcgggttctatgcctgctgcactc
tctgcttcacgtagcacgggctatattgtggataccctacttcattgctctcttggttct
ggtgaaaatggttctcaacccaaaccatgtccacctcgtccaggggagaagggagaaatg
catgtagttcctgttcaattgcccctgatttcttccctcagtaagcttcgaatatctgtt
cctgcggatcttcggccattggaggcaaggcaaagcatccttcttgctgttcaggagctt
cagaaacgttttcctcaaggcctcccgaagcttaaccctgtaaaggacatgggatttgaa
gatcctgaatttgttgatatagtgaaccagattgaggaactggagaaaaaattgttcgct
catccactacacaagtcacaagatgaacatcaacttaagagtttccaaaagaaggcggaa
gtgaaccatgaaattcaacagctcaagtcgaaaatgcgggattcacagcttcaaaaattt
cgcgatgaacttaaaaaccgttcccaagtcttgaagaagctgggtcacatagatgctgat
ggtgttgtgctgttgaagggacgagcagcctgcttgatagacactggggatgaactcctt
gtgacagaattgatgttgaatggtacattcaatgatcttgatcatcatcaaaccgcggct
ttggcaagttgctttatcccaggagacaaaacaaatgaacaaatacatttaagagctgag
ctaactaaaccattacaacagctgcaagatactgcaagaagaatagcagagatacaacgt
gaatgcaagttggagataaacattgaagagtatgtagaggcatcagtacggccattcttg
atggatgtcatctactgttggtcgaagggagcatctttcgcggaggttatacaaatgact
gatatctttgaaggtagcatcattcggctagtaagaaggcttgatgaatttttgaaccag
ttaaaaggtgctgcacatgctgcgggagaagtagatttggagaacaaatttgctgctgcc
agtgagagccttcgacgaggaataatgtttgcaaattctctgtacctctag
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