KEGG   Solanum lycopersicum (tomato): 101262878
Entry
101262878         CDS       T02665                                 
Name
(RefSeq) THO complex subunit 4A
  KO
K12881  THO complex subunit 4
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03013  Nucleocytoplasmic transport
sly03015  mRNA surveillance pathway
sly03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101262878
  09122 Translation
   03013 Nucleocytoplasmic transport
    101262878
   03015 mRNA surveillance pathway
    101262878
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sly03019]
    101262878
   03041 Spliceosome [BR:sly03041]
    101262878
Messenger RNA biogenesis [BR:sly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     101262878
    TREX complex
     101262878
Spliceosome [BR:sly03041]
 Complex C
  Other components
   EJC/TREX
    101262878
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    101262878
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_5 RRM_3
Other DBs
NCBI-GeneID: 101262878
NCBI-ProteinID: NP_001334879
UniProt: A0A3Q7IN09
LinkDB
Position
10:64395806..64400758
AA seq 239 aa
MSNLDVSLDDLIKRNKSSSSRNPRPRTTGFGSGPGPRRRFPNRATNRPAPYSVHAPESTW
DHDMFADHNPSSVRRPGVSGIGTGIKLLISNLDYAVSNEDIKELFLEAGDIKRYSIHYDK
SGRSKGTAEVIFSRRRDAEAAIKRYNNVQLDGKPMKIELAGTNIAPPALPPIRNRLYGNP
NPATRSQQRGGGFSRPRGGGGRGSMRKDGGRGRGRGQNVSAEDLDAELEKYHAEAMQTN
NT seq 720 nt   +upstreamnt  +downstreamnt
atgtcaaatcttgatgtatctctcgatgatttgatcaaaaggaacaaaagttccagtagt
cggaaccctagacccagaacaaccggattcggctctggtccaggtccaaggcgtcgcttc
cctaaccgtgccaccaacaggccggcgccatattccgtccatgcaccggagtctacttgg
gaccatgatatgtttgcggatcataacccgtcgtctgtccgaagacctggggtgtccggt
attgggaccgggatcaagctcctcatttccaatttggattatgcggtttcaaatgaagat
atcaaggagcttttcttagaagctggtgatataaagcgttactcaattcattatgacaag
agtggaagatcaaagggaactgcagaagtaatcttttcacggcgaagggatgcagaggca
gccattaagagatataacaatgttcagctggatgggaagcccatgaaaattgagcttgct
ggaacaaatattgctcctccagctcttcctcccattcgaaatcgtttatatggaaatcca
aatcctgctacaagaagtcaacaaagaggtggtggatttagccgtcctcgaggtggtggt
ggtagagggagcatgagaaaggatggtggaaggggcagaggccgtggtcagaacgtttct
gcagaagatcttgatgctgaattggagaagtatcatgcagaagccatgcagacaaactaa

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