Solanum lycopersicum (tomato): 101262878
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Entry
101262878 CDS
T02665
Name
(RefSeq) THO complex subunit 4A
KO
K12881
THO complex subunit 4
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03013
Nucleocytoplasmic transport
sly03015
mRNA surveillance pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101262878
09122 Translation
03013 Nucleocytoplasmic transport
101262878
03015 mRNA surveillance pathway
101262878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101262878
03041 Spliceosome [BR:
sly03041
]
101262878
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101262878
TREX complex
101262878
Spliceosome [BR:
sly03041
]
Complex C
Other components
EJC/TREX
101262878
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101262878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_5
RRM_3
Motif
Other DBs
NCBI-GeneID:
101262878
NCBI-ProteinID:
NP_001334879
UniProt:
A0A3Q7IN09
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All DBs
Position
10:64395806..64400758
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AA seq
239 aa
AA seq
DB search
MSNLDVSLDDLIKRNKSSSSRNPRPRTTGFGSGPGPRRRFPNRATNRPAPYSVHAPESTW
DHDMFADHNPSSVRRPGVSGIGTGIKLLISNLDYAVSNEDIKELFLEAGDIKRYSIHYDK
SGRSKGTAEVIFSRRRDAEAAIKRYNNVQLDGKPMKIELAGTNIAPPALPPIRNRLYGNP
NPATRSQQRGGGFSRPRGGGGRGSMRKDGGRGRGRGQNVSAEDLDAELEKYHAEAMQTN
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatcttgatgtatctctcgatgatttgatcaaaaggaacaaaagttccagtagt
cggaaccctagacccagaacaaccggattcggctctggtccaggtccaaggcgtcgcttc
cctaaccgtgccaccaacaggccggcgccatattccgtccatgcaccggagtctacttgg
gaccatgatatgtttgcggatcataacccgtcgtctgtccgaagacctggggtgtccggt
attgggaccgggatcaagctcctcatttccaatttggattatgcggtttcaaatgaagat
atcaaggagcttttcttagaagctggtgatataaagcgttactcaattcattatgacaag
agtggaagatcaaagggaactgcagaagtaatcttttcacggcgaagggatgcagaggca
gccattaagagatataacaatgttcagctggatgggaagcccatgaaaattgagcttgct
ggaacaaatattgctcctccagctcttcctcccattcgaaatcgtttatatggaaatcca
aatcctgctacaagaagtcaacaaagaggtggtggatttagccgtcctcgaggtggtggt
ggtagagggagcatgagaaaggatggtggaaggggcagaggccgtggtcagaacgtttct
gcagaagatcttgatgctgaattggagaagtatcatgcagaagccatgcagacaaactaa
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