Solanum lycopersicum (tomato): 101262902
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Entry
101262902 CDS
T02665
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
101262902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sly04121
]
101262902
03036 Chromosome and associated proteins [BR:
sly03036
]
101262902
Ubiquitin system [BR:
sly04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
101262902
Chromosome and associated proteins [BR:
sly03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
101262902
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR5
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WD40_Gbeta
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_Aladin
Beta-prop_WDR41
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
MIOS_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
101262902
NCBI-ProteinID:
XP_004235332
UniProt:
A0A3Q7FNB0
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All DBs
Position
3:56445165..56446596
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AA seq
342 aa
AA seq
DB search
MENSSQESHLRSENSVTYDSSYPIYAMAFSSFTSSLTNRRRRLAVGSFIEEFNNRVDILS
FDEDTLTLKPVPNLSFEHPYPPTKLMFHPNPSASLKTNDILASSGDYLRLWDVTDTSIEP
LFTLSNNKTSEYCAPLTSFDWNEVEPRRIGTSSIDTTCTIWDVEKGVVETQLIAHDKEVY
DIAWGEAGVFASVSADGSVRIFDLRDKEHSTIIYESPKPDTPLLRLAWNKQDLRYMATIL
MDSNKIVILDIRSPAMPVAELERHQASVNAIAWAPQSCRHICSGGDDGQALIWELPTVAG
PNGIDPMSVYTAGAEINQIQWSAAQRDWIAITFSNKLQLLKV
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcaagtcaagaatcgcatctccgatctgaaaattccgttacatatgactcc
tcttacccgatctacgctatggctttttcatccttcacttcttccctcacaaaccgccgc
cgtcgacttgccgtcggaagctttatcgaagagttcaacaatcgggttgatattctctct
ttcgacgaagataccctaacccttaagcccgttccaaatctctctttcgaacacccttat
ccaccaacaaagctcatgtttcatcctaatccttctgcttctctcaagactaatgatatt
cttgcctcttccggcgactacctccgtctctgggatgttactgatacttccattgaacca
cttttcactctcagtaacaataaaaccagtgaatactgtgctcctttgacgtcttttgat
tggaatgaagtggagccgagaagaattggtacttctagtatagacactacttgtaccatc
tgggatgttgaaaaaggagttgtggaaactcaattgatagcacatgacaaagaggtttac
gatatagcttggggtgaagctggggtttttgcgtctgtttctgctgatggatccgttagg
atttttgatttgagagataaggaacactcgacgattatttatgagagcccgaaaccggat
acgccattgttgaggttggcttggaacaaacaggatttgagatacatggctaccatattg
atggatagcaacaagattgtgatcttagatattaggtctccagcaatgccggtggctgaa
ctggaaaggcatcaggcgagtgtgaatgctattgcttgggctccgcagagctgtagacat
atttgttctggtggggatgacggacaggcgctcatttgggagttgccaactgttgcaggg
cctaatgggattgatcccatgtcagtgtacaccgccggagctgagattaatcaaattcag
tggtctgctgcacagcgtgattggattgccattacgttttctaacaagttgcagctgctt
aaagtataa
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