Solanum lycopersicum (tomato): 101263192
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Entry
101263192 CDS
T02665
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101263192
03041 Spliceosome [BR:
sly03041
]
101263192
03036 Chromosome and associated proteins [BR:
sly03036
]
101263192
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101263192
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101263192
mRNA cycle factors
Common to processing body (P body) and stress granule
101263192
Spliceosome [BR:
sly03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
101263192
Chromosome and associated proteins [BR:
sly03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
101263192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-GeneID:
101263192
NCBI-ProteinID:
XP_004234756
UniProt:
A0A3Q7FK90
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All DBs
Position
3:complement(20228635..20235983)
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AA seq
612 aa
AA seq
DB search
MRNSWADSVENVATDNGGPSGASGASASTRRSSYVPPHLRNRPMTAEPLAPSHGGPPSGN
DRSGFNGPTSGPRWGGSRPDYGRQGGYGGGGRGGGWGGRGGGWGREREVNPFGNDADVDL
EQSFDQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEAVNLNIRRCKYVKPTPVQ
RYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGHFPQRPHGSRTVFPLALILSPT
RELSMQIHEEAKKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAK
VSLQMIRYLALDEADRMLDMGFEPQIRRIVQQMDMPPTGERQTMLFSATFPKEIQRLASD
FLANYIFLAVGRVGSSTDLIVQRVEFVHDVDKRSHLMDLLHAQMANGVHGKHSLTLVFVE
TKKGADALEHWLCINGFPATAIHGDRTQQEREQALRTFKRGDTPILVATDVAARGLDIPH
VSHVINFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNDGNLSMAKPLADLMQEANQDVPE
WLTRYASRSSFGGGRNRRAGGGRFGGRDFRRDSSYNRSGGGGGMNYYDGGNSSGGYGNYS
GGYGPGVTSAWD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaggaactcatgggcagattctgttgagaatgtagctactgataatggtgggcctagt
ggcgccagtggagcttctgcttctacgaggagatcatcttatgtcccaccgcatcttcgc
aacagaccaatgacagcggaacctctagctccatcgcacggtggcccaccttcgggtaat
gaccgctcagggtttaatggaccaactagtgggcctcgatggggtggttctaggccagat
tacggacgccaaggggggtatggtggtggtggaagaggaggtggttggggtggcagagga
ggtggttgggggagagagcgggaagttaacccgtttggtaatgatgcagatgtggacttg
gagcaatcgtttgatcaagagaatactggtataaattttgatgcttatgaggatattcca
gtggaaacaagtggagaaaatgtgccacctcctgttaatacatttgcagagatagattta
ggggaggccgttaacttgaatattaggaggtgcaaatatgtcaagccaactcctgtccag
cgatatgcaattcccatctccttagcaggacgagatctcatggcctgtgcccagactgga
tcaggcaagacagctgccttttgtttcccaattattagtggaatcatgagggggcatttt
ccgcaacggcctcatgggtcgcggacagttttcccccttgctcttattctctcaccaaca
agagagctctcaatgcagatacacgaggaagctaaaaagttctcttatcagactggtgta
agagtggtagtggcctatggtggagccccgattaatcaacagctcagagagcttgagaga
ggtgttgatattcttgtggcaactcctggaagactggtcgatttacttgagagagcaaaa
gtttcattacagatgattagatatttagctctcgatgaggcagatcgtatgctggacatg
ggattcgaacctcaaatcagaaggatagtgcagcaaatggatatgcctccaactggtgaa
agacagactatgctgttcagtgccacattcccaaaagagattcagagactggcatctgat
tttcttgcaaactacatatttttggcagttgggcgggttggttctagtactgatttgatt
gttcagcgagttgagtttgtgcatgatgttgacaagagaagccatcttatggatctactt
catgcacagatggctaatggggttcatggcaagcattctctaactttggtatttgttgaa
acaaagaagggtgctgatgcattggagcattggttgtgtattaatggatttcctgcaact
gctattcatggtgataggactcagcaggaaagggagcaagcattgagaacattcaagaga
ggagataccccaattttagttgcaacggatgtggccgctcgaggccttgatatccctcat
gtttctcatgttataaactttgaccttcctaatgacattgatgattatgtgcatcgtata
ggcaggacaggtcgtgcaggcaagactggattagcaactgctttctttaatgatggtaac
ctttccatggccaaacccctagctgacttgatgcaagaagctaatcaggatgtacctgaa
tggttgactcgttatgctagccgttcatcattcggaggaggcagaaacaggcgagctggc
ggagggcgttttggtgggcgtgacttcaggagggattcgtcgtacaatagaagtggaggg
ggaggtggtatgaattactatgatggaggtaatagtagtggcggttatggcaattatagt
gggggatatggtcctggagtaactagtgcttgggactag
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