Solanum lycopersicum (tomato): 101263245
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Entry
101263245 CDS
T02665
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101263245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
101263245
03009 Ribosome biogenesis [BR:
sly03009
]
101263245
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101263245
Spliceosome [BR:
sly03041
]
Complex A
U2 snRNP components
U2 related factors
101263245
Complex B
101263245
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
101263245
Ribosome biogenesis [BR:
sly03009
]
Eukaryotic type
90S particles
Helicases
101263245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
ResIII
nSTAND3
SRP54
AAA_30
T2SSE
FtsK_SpoIIIE
AAA_7
PhoH
TsaE
AAA_29
NACHT
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
101263245
NCBI-ProteinID:
XP_004229376
UniProt:
A0A3Q7EHK6
LinkDB
All DBs
Position
1:complement(78200688..78206499)
Genome browser
AA seq
723 aa
AA seq
DB search
MGTERKRKVSLFDVVDDSAAKKLNGGLNGGNSMTASINKWNAKPYSQRFYDILEKRKTLP
VWHQKEEFLQALKSNQTLILVGETGSGKTTQIPQFVLDAVEVETADKRRKYMIGCTQPRR
VAAMSVSRRVAEEMDVVIGEEVGYSIRFEDCTSARTVLKYLTDGMLLREAMADPLLERYK
VIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGR
LHPVEIFYTQDPERDYLEAAIRTVVQIHTCEPPGDILVFLTGEEEIEDACRKITKEIGNM
GDQVGPVKAVPLYSTLPPAMQQKIFEPAPPPVVEGGPPGRKIVVSTNIAETSLTIDGIVY
VIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFHNDLQ
PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNM
TRLGEIMSEFPLDPQMGKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAADEAKN
RFGHIDGDHLTLLNVYHAYKQNQEDPQWCYENFINQRALKSADNVRQQLSRIMARFNLKL
CSTDFNSREYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVI
YNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLANFPQCEAKRVLERLYKKREREKDESK
SKK
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgggaaccgagcggaagaggaaggtgagcttgttcgatgtggtggatgactcggcagcg
aagaaactcaatggaggcttaaatggtggaaacagcatgacggcttcgatcaacaagtgg
aatgcaaagccttactcacagagattttatgacattttggagaagaggaagactcttccg
gtttggcatcaaaaggaggagttcttacaggcattaaaatccaatcaaactcttatcttg
gtcggtgaaaccggtagtggtaaaacaactcagattccacagtttgttttggatgctgtt
gaagtagagacagctgataagcgcaggaaatatatgattggttgcactcaacctcggagg
gtggctgcaatgtctgtctctcgtcgtgttgctgaagagatggatgttgtaattggggaa
gaagttggatatagcattcgttttgaggactgcactagtgctagaactgttttaaaatac
ttaacagatggtatgcttttaagagaagcaatggcggatcctctattggaacgctacaaa
gtaattattcttgatgaagctcatgaaagaactttggcaacagatgtcctgtttgggctt
ttgaaagaggtgttgaaaaatagaccagacctaaagctagttgttatgagtgccacactt
gaagcagagaagtttcagggttacttctttggtgcacctctcatgaaagttcctggaagg
ctccatccagtggaaattttctacacgcaggatcctgagagagactatcttgaggctgcc
attcggactgtggtgcagattcacacatgtgaacctcctggtgacatccttgttttcctc
accggagaagaggagattgaagatgcatgtcgcaaaatcacaaaggaaattggtaatatg
ggtgatcaagtaggccctgttaaagcggtgcctctttattctacacttccccccgctatg
cagcaaaagatttttgaaccggccccaccaccagttgtggagggtggtcctcctggcagg
aagattgttgtgtcaaccaacattgcagaaacatctttgacaatagatggcattgtttat
gtcatagatccaggatttgctaagcaaaaggtttataatccaagggtgcgtgtggaatct
ttgttggtgtctcctatttcaaaggccagtgcacaccagagatcaggacgtgctggaaga
actcagccaggaaaatgctttagactttacacggagaaaagtttccataatgaccttcaa
cctcagacgtatccagaaatacttcggtcaaatttggctaatacagttctaactttgaag
aagctaggtattgatgacctagttcattttgattttatggatcctcctgcccccgagacg
ttgatgagagcactagaggttttaaattacttgggagcattggatgatgatggaaacatg
acccggctgggtgagataatgagtgaatttcctctcgaccctcagatggggaaaatgctt
gttgtcagccccgaattcaactgctccaacgaaatcctctcaatatctgccatgttatca
gtacccaattgctttgtccggcctagggaggctcaaaaagctgcggatgaagcaaagaat
cggttcggtcacatagatggggatcatttgacgttgctgaatgtgtatcatgcctacaag
caaaaccaggaggatcctcaatggtgttatgagaatttcatcaatcagagggctctcaaa
tcagctgacaatgtgaggcaacagctttctcgcataatggccaggttcaacctcaagtta
tgcagcacagacttcaacagtcgcgagtactatgtgaacataaggaaggctatgttagcc
ggatatttcatgcaggttgcacacctagagcgtactgggcattatctaaccgttaaagac
aatcaagtggtacacttgcatccttcaaattgcctggatcacaagccagaatgggttata
tataatgaatatgtcttaacaagcaggaatttcatccgcactgtgactgatatccgtggt
gaatggttggttgatattgcaccacactactatgaccttgcaaactttccacaatgcgag
gcgaaacgagtgcttgagcggttatacaagaagcgggagcgagaaaaagatgaaagcaag
agcaaaaaatga
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