Solanum lycopersicum (tomato): 101263393
Help
Entry
101263393 CDS
T02665
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101263393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101263393
03012 Translation factors [BR:
sly03012
]
101263393
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101263393
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101263393
Translation factors [BR:
sly03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101263393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_16
ATPase
Dicer_dimer
NACHT
PhoH
RETICULATA-like
AAA_11
Motif
Other DBs
NCBI-GeneID:
101263393
NCBI-ProteinID:
XP_004235749
UniProt:
A0A3Q7FUP8
LinkDB
All DBs
Position
3:64540676..64551114
Genome browser
AA seq
1201 aa
AA seq
DB search
MPYTNLIQNCLKVRLKANQFLSTMSTSLQFCPNRFHFETNPLLYRSSQSVIPQKRCLHGS
VGFFCSAKGSSSSSSSVVLRRKRHGSSSSSSYPSPYFYQQNLGYGRFAYDECESESESDR
ETQSSKQLGESTLHNIEEWRWKLSMLMRKKDDQEVVSTDKKDRRDFEHISAMATRMGLHC
RQYEKTIVCSKVPLPNYRPDLDVKRPQREVVLHYGLQSRVGDLLEAHLSKKSVNKGNLTH
NAFLRGSNDNSSPNDKELHENEKPFARNVVAERILRRRSLEMRSKQEDWQGSPEGQKMLE
LRRNLPAYKEREALLRAISENQVVVVSGETGCGKTTQLPQYILEAEIEAARGATCNIICT
QPRRISAMSVAERVAAERGENLGESVGYKVRLEGMRGRDTRLLFCTTGILLRRLLVDRKL
EGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELKLILMSATLNAELFSSYYGGAPMIH
IPGFTYPVRSHFLENILEMTRYRLTPYNQIDNYGQDKMWKMQKQTIRKRKTQIASAVEES
LESADFGQYNPLTRDSLSCWNPDSIGFNLIEHVLCHICRNERPGAVLVFMTGWDDINTVK
DQLQAHPLLGDPSRVLLLACHGSMASAEQKLIFDKPEDGIRKIVLATNMAETSITINDVV
FVVDCGKAKETSYDAINNTPCLLPSWISKASARQRKGRAGRVQPGECYHLYPRCVYEAFA
DYQLPELLRTPLQSLCLQIKSLQLGSISDFLSKAIQSPEPLSVQNAIEYLKTIGALDEDE
NLTVLGHNLSMLPVEPKLGKMIILGVVFNCLDPVLTVVAGLSARDPFLMPFDKKDLAESA
KAQFSARDFSDHLALVRAYDGWKDAERQQSGYDYCWRNFLSAQTLKAMDSLRKQFLYLLK
DIGLVDSIQSCNAWSNNEHLVRAIVCGGLFPGICSVVNKEKSISLKTMEDGGVLLYSNSV
NAQEPQIPYPWLVFNEKVKVNAVFLRDSTAVSDSVVLLFGGSISGKALDGHLMMLGGYLE
FFMNPSLANTYISLKRELNELVHKKLSDRNFDVGSHGELLEAVKLLVSEDQCEGKFVYGR
KPSPKKSAKELQKNVISKKGSGGENPKSHLQTLLARAGHQSPSYKITQLKNNKFRATVIF
NGLNFSGQPSSSKKDAEKDAAAEALQWFTGETQSSSKAVEHMSALLKKSKSKNQLHSTKW
R
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgccttacactaatcttattcagaactgcctcaaggtgaggcttaaagccaatcaattt
ctatccactatgtccacttctcttcaattttgtccaaatcgttttcactttgaaacaaac
cctcttctgtaccgctcgtcacagtcagtaatacctcaaaaacgatgccttcatggaagt
gttggattcttttgttcagctaaggggtcttcttcttcttcgtcgtctgttgtgttgagg
cggaaaagacatggttcatcttcgtcttcttcttatccttctccgtatttttatcagcag
aatttggggtatggaagatttgcgtacgatgagtgtgagtctgagtcggagtctgatcgt
gaaactcagtcgtctaagcaattgggtgaatcaacccttcataacattgaagaatggagg
tggaagttaagcatgctaatgcgcaaaaaggatgaccaagaagtggtctcaacggataaa
aaggatcgacgtgattttgagcatatatcagctatggcaactagaatgggtttacactgt
cgccagtatgaaaaaacaattgtgtgtagcaaagttccattgccaaattataggccagat
ttggatgttaagcgtccacaaagagaggtagtattacattatggattacaaagtagggta
ggtgatcttcttgaagcacatctttctaaaaagtcagtaaacaagggaaacctgacacat
aatgctttcttgagaggaagcaatgacaacagttctcccaatgataaagagcttcatgag
aatgagaagccatttgcacgaaatgttgtagcagagaggattctcaggcgaaggagcttg
gagatgcgtagtaaacaagaagattggcagggatctcctgaaggccagaagatgctagaa
cttcgaagaaatctccctgcatataaagagagagaggcattgcttagagccatttctgag
aatcaggtggtggttgtgtctggggaaactggatgtggtaaaactacccaattgcctcag
tacattttagaagctgagatagaagctgctcgcggagctacttgcaatatcatttgtact
caaccaaggcgaatatctgctatgtctgttgctgaaagagttgctgcagagcgtggggag
aatctgggagaatctgtgggctataaggttcggcttgagggcatgagagggagggatacc
cgcctcttattttgcacaactggtattcttctgaggagattactggttgatagaaagttg
gaaggtgtcactcacgttattgtagacgagattcatgaacgcggaatgaatgaagatttc
cttttaattgtccttaaagatctccttccccgtcgacctgaattgaagctgattttgatg
agtgctactcttaatgccgagctcttctcttcctattatggtggcgccccaatgatccat
attcctggttttacttatcccgttagaagtcattttctggaaaatattttggaaatgact
agataccggttaactccatataatcaaattgataactatggtcaagacaagatgtggaaa
atgcagaaacagactattaggaagaggaagacccaaattgcttcagctgttgaggaatca
ctagaatcagctgattttgggcagtataatcctctgactagggattcactatcctgttgg
aatcctgattcaattggcttcaaccttattgagcatgtgctttgtcacatatgtagaaat
gaaagacctggtgctgtgttggtttttatgactggttgggatgacattaatactgtgaag
gaccagctgcaggctcatccgctgttgggggatccaagcagagttttgctgcttgcatgt
catggttccatggccagtgcagagcagaaattgatttttgataagccagaggatggaatc
aggaaaattgtgttagctaccaacatggctgaaacaagtatcaccataaatgacgtggtt
tttgtggtcgactgtggaaaggcaaaagagacatcttatgatgcaattaacaacactccc
tgtttgcttccttcttggatttcaaaagcttccgctcggcaaagaaaaggaagagctggc
cgtgttcagcctggcgagtgttatcatctatatcccagatgtgtatatgaagcttttgca
gactatcaactgccagagcttctgagaacacctttacagtccctatgcctgcagattaaa
agcttacaacttggaagtatttcagactttctatccaaggcaatccagtcgccagaacca
ctatctgttcagaatgctattgagtatttgaagacaataggggctctagatgaggatgaa
aatctgacagtacttggacacaacctatcaatgcttccagttgagccaaaactggggaaa
atgataatattaggtgtagtattcaactgcctggatccagttctgacagttgttgctggt
ttaagtgctagagatccatttttaatgccatttgacaagaaggatcttgctgagtctgcc
aaagcccagttttctgctcgtgacttcagtgatcaccttgctcttgttcgggcttatgat
ggctggaaagatgctgaaaggcagcaatctggttatgattactgttggagaaatttcctt
tctgcacaaactctcaaagcgatggactcccttcgaaagcaatttttgtatctgcttaag
gacattggtttagttgatagcattcagagttgtaatgcctggagtaacaatgaacatctg
gttcgagcgattgtatgtggtggactattccctggcatatgctctgttgtgaacaaggaa
aagtcaatctcattgaaaaccatggaggatggtggagtccttttatactctaattctgtc
aacgctcaagaacctcaaattccatacccatggcttgtcttcaacgaaaaagttaaagtg
aatgcagtattcctgcgtgattctacagccgtatctgattctgtggtactcttatttggt
ggaagcatttccggaaaagctttagatggacacttgatgatgcttggaggatacttggag
tttttcatgaacccctcactggcaaatacttacataagcttgaagagggagcttaatgaa
cttgtccataagaaactctcggaccgtaattttgatgtaggaagtcatggggagctatta
gaagctgttaaattgctggtgtcagaggatcaatgtgaaggtaaatttgtctatggtcgt
aaaccgtcccccaagaagtctgcaaaggagttacagaaaaatgtcatttcaaagaagggc
agtggtggtgagaatccgaagtctcatctccaaacgttgcttgctcgggctggccaccaa
tcacccagttataagataacacagctaaaaaacaataagttccgcgccactgtaatattc
aatggtttaaatttttctggccagcctagcagtagcaagaaggatgctgaaaaagatgca
gctgctgaagctctacagtggtttactggtgagacccaatcctcttctaaagctgttgaa
cacatgtcagcacttctgaagaaaagcaagagtaaaaatcaacttcatagtacaaaatgg
aggtaa
DBGET
integrated database retrieval system
