Solanum lycopersicum (tomato): 101263418
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Entry
101263418 CDS
T02665
Name
(RefSeq) RNA polymerase sigma factor sigA
KO
K03086
RNA polymerase primary sigma factor
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sly03021
]
101263418
Transcription machinery [BR:
sly03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
101263418
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
SpoOE-like
Motif
Other DBs
NCBI-GeneID:
101263418
NCBI-ProteinID:
XP_004241445
UniProt:
A0A3Q7HV63
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Position
6:47331835..47337048
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AA seq
505 aa
AA seq
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MAIAAVIGPYAGNRILSSSFYYSDLTEKLACSGDHALICNPTRNVINAKKSSNYSAGYVS
NRKKQSVKAVKEHVNIASNHSDVEPMVEMLKKLQNESCSKEDPVEVLLLLQKSMLEKQWN
LSAEKTLEAFPPNEKNCKKKMQITCSGTSARRRRMDTRKRVQIPKASAEANSASKRLRSV
VGPELQQNRLRGYMNGVVNQELLTHKEVVQLSKKIKFGLYLEEQKASLKERLGCEPSDDQ
LAVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMADLIQGGLIGLL
RGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKVKLKDS
GITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIADNRLEN
NPWHGVDGWALKDEVNNLISSILRERERDIIRLYYGLDNECLTWEDISRRIGLSRERVRQ
VGLVALEKLKHAARKKQLDAMLVKH
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggccattgctgcagttatcggaccctatgcaggaaatagaatcttaagctcgtctttc
tattattctgatctgactgaaaagttagcttgtagtggtgatcatgctttgatctgcaat
cctacgagaaatgtgatcaatgctaagaagtcatccaattatagcgctggttatgtttcc
aatcgaaaaaaacaatccgttaaggctgttaaagagcatgtcaacattgcctctaatcat
tctgatgtggagccaatggttgaaatgttaaaaaaactgcagaatgaaagctgcagcaaa
gaagatccggtggaggttcttcttcttctgcagaaatctatgcttgaaaaacagtggaat
ctttcagctgagaaaacattggaagctttcccaccaaatgaaaagaactgtaaaaagaag
atgcagatcacttgttcaggaacttctgctaggcggaggagaatggatactcgtaaaaga
gttcaaattccaaaagcttcagctgaagcaaatagtgcaagcaagcgactgagatctgtt
gtcggtccagagctacaacaaaaccgtttgagaggttacatgaatggtgtcgtaaaccaa
gaacttcttacacataaggaagtggtgcaactatccaagaaaatcaaatttggtctttat
ttagaagaacagaaggccagtctgaaggaaagattgggatgtgaaccttctgacgatcaa
ctcgcggtttccttgaagatgtctcttgctgatttacgatctacattaatggagtgttcc
ttggctagagaaaaacttgcaatgagcaatgttcgtcttgtcatgtcaattgcgcaaaga
tacgatagcatgggtactgaaatggctgacctcattcaggggggacttattggactactt
cgcgggatagagaaatttgatcactcaagaggattcaaaatctcaacttatgtttattgg
tggattcgtcagggcgtttcccgagcattagttgataactcaagaacattgagattgccc
atacatctacatgaaagactgagtttgatccgtaatgcaaaagtcaagcttaaagatagt
ggaataactccatcaatcgaaaaaatagctgaatgccttaacatgtcccagaagaaagtc
agaaatgcaactgaggcaagcagcaaggtgttttcacttgatagggaagcatatccctct
ttaaatggccttcctggagcaacacttcatagctacattgctgacaatcgcctggagaac
aacccatggcatggagttgatggatgggcgctcaaggatgaagtaaacaatctcatttct
tcaattctcagggaacgcgagagagatattatccgactgtactatggtctggacaatgag
tgccttacctgggaggatattagtagaaggataggtttatccagagaaagagtgaggcaa
gttggattagttgcacttgagaaattaaaacatgctgccagaaaaaagcaattagatgca
atgttggttaaacattga
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