Solanum lycopersicum (tomato): 101263664
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Entry
101263664 CDS
T02665
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101263664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101263664
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
101263664
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
PIN_4
OB_Dis3
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
OB_RNB
Toxin_R_bind_C
Motif
Other DBs
NCBI-GeneID:
101263664
NCBI-ProteinID:
XP_004232582
UniProt:
A0A3Q7FTD3
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All DBs
Position
2:complement(62367714..62386423)
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AA seq
935 aa
AA seq
DB search
MLKNKAFSRQTRQGRIIKEVREHYLRDDIYCGAPYCKNGCKVSSPCLSDSHFTILVLDTN
VVLNQIDLLENQAIDNVVVLSVVLSEVKNKNIAVYNRLRALCSNSLRKFFVFSNENHKDT
YVKTMAGESPNDRNDRAIRVAAKWYQDHLGSAVSVLLITNDRENKKKAIEEGISAETVEC
YVKSLGQPELLDLIVQPPSEDVKMDDVEDLRPSKRKVIYNEHKPMSEITSGLLRGLLHQG
KLRVNRFNPFEAYVGSESIGDEIIIYGRANMNRAFDGDIVAVELLPPEQWHEEKSLALAD
EDDEEEDVHLAPNTADDAPRALNQGQTAPEEMKPSRPTGCVVGIIKRNWHSYCGSLEPMP
MPAGDGGRAHALFVSKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDRLSRYPTGHYVRTI
GEIGDRDTETEVVLIENDIDARPFSAQVLACLPPLPWLVSSQDLTNPIRQDLRHLRVCSV
DPPGCRDIDDALHCMPLSNGNFEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVERRID
MLPKPLTEDICSLRSDVERLAFSVIWEMTPDAEVISTRYTKSVIKSCAALSYVEAQVRMD
DSRLVDPITSDLRNLNGLAKIMRQRRIDRGALTLASAEVKFQIDTETHDPLDIGMYQIRE
ANQMVEEFMLAANVAVAEKILKHFPVCSLLRRHPSPTKEMLEPLLRTAEAVGLSLDVTSS
KALADSLDLAEGDDPYFNKLIRILATRCMTQAVYFCSGDLSPPEYLHYGLASPLYTHFTS
PIRRYADVIVHRLLAASLGIYQLPGVFQDRPKLTSISDNLNYRHRNAQMASRASVELHTL
IFFRKRPTDTEARIVKIRSNGFIVFVPKYGIEGPVYLTSKGDNGGEWVVDEKQQKIRKLD
GSVSYGVLGTVRIHMEVVEPQPNRPKLQLTLVSDR
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagaacaaagctttctcgcgtcaaacaagacaaggcagaataattaaggaagtt
agggaacactatttgagagatgatatttattgtggagccccttattgcaagaatgggtgt
aaagtttcatctccttgtttaagcgactctcacttcactattcttgttcttgacaccaac
gttgttctcaatcagattgatttgctggagaatcaagctattgacaatgtggtggtgcta
tccgtggtcttgtcggaggtcaagaacaagaatattgcggtttataacagactcagggct
ctgtgtagcaattctttaaggaagttctttgtcttttctaacgaaaatcacaaggatact
tatgtgaagaccatggcaggtgaaagtccaaatgatcggaacgatagagctattagggtt
gcagctaaatggtatcaagatcatcttggcagcgcagtaagtgtcttgctaattacgaat
gatagagagaataagaagaaggcaattgaagagggaatttctgcagagacagttgagtgc
tatgtaaagtcacttggtcagccagaattgcttgacctaatagtacagcctccttctgaa
gatgttaaaatggatgatgttgaggatttaaggccttcaaagcgaaaagtcatttataac
gagcataagcccatgtcagaaattacttctggcttgcttcggggactccttcaccagggg
aaacttcgtgttaaccgttttaatccatttgaagcatatgtcggaagtgaaagcattggt
gatgagataattatatatggacgtgcaaacatgaatagagcttttgacggtgatatagtg
gcagttgagcttttgcctccagaacagtggcacgaggagaagtctttggcattagccgat
gaagatgatgaagaagaagatgttcatttagctccaaacactgctgatgatgctccaaga
gccctgaatcaagggcaaactgcacctgaggaaatgaaaccttctcgtccaactggatgt
gttgttggtatcataaagcggaactggcactcttactgtggatccttggagcctatgcct
atgccagctggtgatggtggtcgtgcccatgccttatttgtatccaaagaccgcagaatt
ccgaagatacggatacaaactcgtcaattgggaaatttgctggataaacggattattgtt
gcggttgattcatgggatcgtttgtcccgatatccaactggtcactatgtgaggactatt
ggtgaaataggtgatagggacaccgaaacagaggtggtactaatagagaatgatatagat
gccaggccattttctgcccaagtgttggcgtgcttgccaccattaccttggttggtgtct
tctcaagatttgacaaatccgattagacaggatttgcgtcacctgcgtgtatgtagtgtg
gaccctcctggatgcagagatattgatgatgcattgcattgtatgcctctttcaaatgga
aattttgaagtgggagttcatattgccgatgtcacaaattttgttcatcctggaactcca
ctcgatgatgaggcttcacaaaggggcacttctgtatatcttgtagagcgtagaatcgac
atgcttccaaaacctcttacagaagatatttgttcacttcgttctgatgttgaaagacta
gctttctcagttatctgggaaatgacacctgatgctgaggttatttctacaagatacact
aaaagtgtgattaaatcatgtgcagcattatcctatgtcgaggcacaagtgagaatggat
gacagtcgcttggtggatccaataacttcagatttacgaaatttgaatgggttagccaag
ataatgaggcaaagacgcattgataggggtgcactgacacttgcttctgctgaagtcaaa
tttcagattgatactgaaactcatgaccctcttgatattggaatgtatcagattcgtgaa
gcaaaccaaatggttgaggagtttatgcttgctgctaatgttgcagttgctgaaaaaatc
cttaagcattttcctgtctgctcactattaagacgccatccaagcccaaccaaagaaatg
cttgagcctcttctccgcacagctgaagcagttggtcttagtttggatgtgacatcatcc
aaagcattggctgactctctagatcttgccgagggtgacgatccatacttcaacaagctg
atccggattctggcaaccagatgcatgacacaggcggtttacttttgtagtggagacctt
agtcctcctgaatatcttcattatggtcttgcctctcctctttatactcatttcacctcg
cccattagaagatatgctgatgtcatcgtccatcgattgcttgctgcttctttgggaatt
tatcagcttcctggtgtgttccaagatagacccaagctaactagtatttctgacaatcta
aattatcggcatagaaatgctcagatggccagcagagcatcagtagagctccatactctc
attttcttcaggaagcgaccaacagataccgaggcgagaatagttaaaataagatccaat
ggcttcattgtctttgtgcccaagtatggtattgaagggcctgtatacttgacgtctaaa
ggggacaatggaggggaatgggtagtcgatgagaaacaacagaaaattagaaagcttgat
ggaagtgtttcgtatggtgtacttggaacagtgagaattcacatggaagtcgttgagcct
cagcctaatcgacctaaactacaacttacccttgtatcagaccgataa
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