Solanum lycopersicum (tomato): 101263831
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Entry
101263831 CDS
T02665
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE-like isoform X1
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101263831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sly03036
]
101263831
Chromosome and associated proteins [BR:
sly03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
101263831
Chromatin remodeling factors
NuRD complex
101263831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDII_SANT-like
DUF1087
Helicase_C
Chromo
ResIII
HDA2-3
PHD
CHDCT2
PHD_4
DEAD
Myb_DNA-binding
C1_2
zf-HC5HC2H
PHD_2
C1_1
Motif
Other DBs
NCBI-GeneID:
101263831
NCBI-ProteinID:
XP_004244891
UniProt:
A0A3Q7IH67
LinkDB
All DBs
Position
8:complement(38172936..38227161)
Genome browser
AA seq
1463 aa
AA seq
DB search
MASLVERLRVRSDRKPMYKLDESDDETDMMPGKSGTKKQEIEKIVRTDVKDDSCQACGGD
SNLLYCRTCNYAYHPKCLVPPLKAPLPSSWSCPECVSPLNDIDKILDFEMRPTVAEDQDA
SKLGSKQVFVKQYLVKWKGLSYLHCTWVPEKEFVKVYKAYPRLKTKVNNFHRQMSSMTNS
EDEYVAIRPEWTTVDRILACRGDGEEKEYLVKWKELPYDECYWEFESDISSFLHEIERFH
VVQSRRKKSSSKQKGRPIETTESNKKAKEFQQYESSPEFLSGGSLHPYQLEGLNFLRFAW
SKQTHVILADEMGLGKTIQSIALLASLFEEKVSPHLVIAPLSTLRNWEREFATWAPQMNV
VMYVGGAQARAVIREYELFFPKNLKKTKKKKSGQIVGESKQDRIKFDVLLTSYEMILMDS
ASLKPITWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFL
DAGKFGSLEEFQQEFADISQEEQVSRLHKMLAPHLLRRLKKDVMTELPPKKELILRVELS
SKQKEYYKAILTRNFQILTRKGGAQISLINVVMELRKLCCHPFMLEGVEPEDNDEFTKEL
LESSGKLQLLDKMMVRLKEQGHRVLIYSQFQHMLDLLEDYCNYRKWQYERIDGKVGGAER
QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ
TNKVMIFRLITRGTIEERMMQMTKKKMILEHLVVGRLKAQNINQEELDDIIRYGSKELFA
DDNDEAGKSRQIHYDDAAIDRLLDREQVIDEDAAANDDEEDSFLKAFKVANFEYVEEAEA
TAEEEASTAPVENKATVNNSERASYWEELLRDKYEVHQVEEFKTMGKGKRSRKQMVSVDD
DDLAGLEDVSTDGEDDSYDAEADSSDGETASLGAPVLRKAHRKKARVDSAEPLPLMEGEG
RSFRVLGFNQSQRAAFVQILMRFGAGEFDWADFTPRLKQKTYEEIQDYGALFLSHISEEI
TDSPTFSDGVPKEGLRIPDVLVRIAVLLLIRDKVKAFSEMTGGSLFADDIMSRYPGLKGG
KHWKDEHDLLLLRALLKHGYGRWQTIVDDKELSIQEIICKELNLSVINLPVPGASQPQVA
PARGPSQDLPASGVPQAEFTVPGAFQPPHGVNTANAGSVGGQVKATGDGNTCGAELSHGT
SDPSNRQVIQDSSSLYHHYREMQRKQVEFIKKRVLLLEKGLNAEYQKEAFDDEKSHELPN
EGMACDTKVVDEPNRNVEEANTEMTDHSPRLVAISPQGISQVACDSKPDRLSVAELYNKM
CLVLSGNVQDSFNESHPSSGMKKNILPLEAICQQMNQILSSPQQNTPNFGRKLVQEDRNS
EASKSSYPVPSSQVDDRVLNAEKEHDSVLKKPESGSKSASSCTVASMTENHHNVTPAVLE
TRPSSTSTGDDDIEMVDISTSNA
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atggctagtttggtggagagacttcgtgtgcggtcagatcgaaaacctatgtacaagtta
gatgagtctgatgatgaaactgatatgatgcctggaaaatctgggactaagaaacaggaa
attgagaaaattgttcgaactgatgtgaaagacgactcctgtcaagcttgtggaggagat
agtaatcttttgtattgtagaacatgtaactatgcttaccaccccaagtgtttagttcct
ccactaaaggctcctcttccaagcagttggagttgccctgaatgtgtgagtcccctgaat
gatattgacaaaatattggactttgaaatgcgccctactgttgctgaggatcaggatgct
tccaagctagggtcgaagcaagtatttgttaaacagtaccttgttaagtggaaaggattg
tcgtatcttcactgcacatgggtgccagagaaagagttcgtaaaagtttacaaagcatat
ccccgtttgaagactaaagtgaataacttccatcgccaaatgtcatcaatgactaactct
gaagatgaatacgtcgcaatccgacctgagtggactacagttgatcgaattcttgcttgc
aggggagatggtgaagaaaaagagtatcttgttaagtggaaggagcttccgtacgatgag
tgctactgggaatttgaatcagacatttcttcttttctgcacgaaattgaaagatttcat
gtagttcagtctagacgtaaaaaatcttcaagtaagcaaaagggaaggcctatagagaca
actgaatctaacaagaaagccaaagagtttcaacagtacgaaagcagtcctgaatttctt
tctggaggatcactgcatccataccagcttgaagggctgaatttcctgcgttttgcttgg
tccaaacagacacatgtcattcttgctgatgaaatggggctaggcaaaacaatacagagt
attgcacttctagcctctctttttgaagagaaggtctctccacatttagtaatagcacct
ctttcgacattgagaaattgggagcgtgagtttgccacttgggctcctcaaatgaatgtg
gttatgtatgtgggaggcgcacaagctcgtgctgttattagagaatatgaactttttttc
cccaaaaatcttaagaagaccaagaaaaagaaatctggtcaaattgttggtgaaagcaag
caagatagaataaaatttgatgtcctcctcacatcatacgaaatgatcctcatggatagt
gcctctctgaagccaatcacgtgggagtgcatgattgttgatgaaggtcatcgtcttaag
aacaaggattccaagttgttttcatctttgaagcagtactctagcaggcaccgtgttctt
ttgactggaactcctctccagaacaatctggatgaacttttcatgctgatgcacttcctt
gatgctgggaagtttggtagcttggaggaattccagcaagagtttgcggacattagtcag
gaggaacaggtttcaagacttcataaaatgctggcacctcatctgctcagaagactcaag
aaagatgtcatgacagagctgcctcctaaaaaggaactcattttacgtgtggaactgagt
agtaagcagaaagaatattacaaagctattctgactcgtaacttccagatactgactcgc
aagggaggtgctcagatttcgcttataaatgtggtgatggagctgcgcaagctttgctgt
catccatttatgttagaaggtgttgagccagaggacaatgatgagtttaccaaagagctg
ctggaatcatctggaaaattacaacttcttgacaagatgatggttaggcttaaagaacaa
ggacacagagttcttatatattctcaatttcagcatatgcttgatttgctggaagactac
tgtaattataggaaatggcaatatgaaaggattgatggaaaagttggcggagctgagaga
caaatccgaattgatcgatttaatgctaaaaattcttcaagattttgtttcctgctttca
acaagggcagggggtttaggaataaacctggcaactgctgatacagtaattatttatgac
agtgattggaatccccatgctgacctacaagcaatggccagagctcatcggcttggacaa
acaaataaggtgatgatcttccgactcataacaagaggaacaattgaagaaagaatgatg
cagatgactaagaagaaaatgattttggaacatctcgttgttggacggcttaaagctcaa
aacatcaatcaggaagaattagatgacatcataaggtatggatcaaaagaattatttgct
gatgacaatgatgaggctggaaaatcccgacaaattcattatgatgatgctgcaatagat
agacttcttgaccgtgagcaagttatagatgaggatgctgcagcaaatgatgatgaggag
gattcatttctgaaggcttttaaggttgctaattttgaatacgttgaagaagcagaagca
acagcagaggaggaagcatcaactgcccctgtggagaataaagcaactgtaaacaattct
gagagggcatcttattgggaagaactgctacgagataaatatgaagtgcatcaagttgaa
gaattcaagaccatggggaagggaaagaggagtcgtaagcagatggtgtctgttgacgat
gatgatcttgctggtctggaggatgtgagcaccgacggagaggatgacagctatgacgct
gaagctgattccagtgatggtgagacagcttcactgggagcgccagttttgaggaaggct
cacagaaagaaagcccgcgttgattctgctgaaccactccctttgatggaaggagaagga
agatcatttagggtactggggttcaatcaaagccaaagagcagcatttgtccaaattttg
atgagatttggggctggtgagtttgactgggcagacttcactccacgattgaagcagaaa
acttatgaagaaattcaagattatggagctctctttttgtcacacatatctgaagaaatc
actgactcaccaacattttcagatggtgttccaaaagaaggacttagaataccagatgtg
cttgttaggatagctgtcttgcttcttataagggacaaggtgaaggctttttcagaaatg
acaggtggctctctttttgccgatgatattatgtctcggtaccctggattgaaaggtgga
aaacattggaaggatgagcacgatctgctgttgctacgggccttgttaaaacatggttat
ggaagatggcagacaattgttgatgacaaggagttgagcatccaagagatcatctgcaaa
gaactgaatctttccgtcataaatttacccgttcctggagcttctcaaccacaagttgct
cctgctcgaggaccttcacaggatcttccagcttccggagttccccaagcagaatttact
gttcccggagcttttcaaccaccacatggtgtaaatacagcaaatgctgggtctgttgga
ggtcaggtgaaagctactggtgatgggaatacctgtggagctgaactttcgcatgggaca
agtgatccttcaaaccgacaagttatccaagattcgtcttcattgtatcatcattataga
gagatgcagagaaaacaagttgaattcatcaagaaaagggtgctacttcttgagaagggc
cttaatgcagaatatcagaaagaagccttcgatgatgaaaaatctcatgaactgcccaat
gaagggatggcgtgtgataccaaggttgtggatgaaccaaatcgaaatgttgaagaagcc
aatactgaaatgactgaccattccccaagactagtagcaatttctccacagggaatctct
caagttgcttgtgatagtaaaccagaccgtttaagtgttgcagagctttataacaagatg
tgcctggtactttctggaaatgtccaagactcatttaatgagagtcaccctagttcaggg
atgaaaaagaacatccttccgctggaagcaatttgtcaacagatgaaccaaattctttct
tctcctcagcaaaatactcctaattttgggaggaaactggttcaagaagatcggaattct
gaagctagtaaatccagttatccagtcccttcatctcaagtagatgatagggtgctcaat
gctgagaaagaacatgacagtgttctaaaaaagccagaatctggatccaagagtgctagc
agttgtacagttgcaagtatgactgagaaccaccacaatgttactcctgcagttctggag
actagacctagtagtacatcaactggagatgatgatatagaaatggtggacatttctact
tcaaatgcctga
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integrated database retrieval system
