Solanum lycopersicum (tomato): 101263933
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Entry
101263933 CDS
T02665
Name
(RefSeq) uncharacterized protein isoform X1
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101263933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101263933
03400 DNA repair and recombination proteins [BR:
sly03400
]
101263933
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
101263933
Messenger RNA biogenesis [BR:
sly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
101263933
DNA repair and recombination proteins [BR:
sly03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
101263933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101263933
NCBI-ProteinID:
XP_004246792
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All DBs
Position
9:complement(17239619..17267726)
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AA seq
913 aa
AA seq
DB search
MDMKSTLKKYFGYTEFRPYQKEIIEKILDGKDCLVIMATGSGKSLCYQIPPLITGKVAVV
ISPLISLMQDQVMTLKQRGIKADYLSSAQTDRGVQSNAELGHYDILYMTPEKACALPISF
WSRLLKAGMCLLAVDEAHCISEWGHDFRVEYKQLDKLRNVLLNVPFVGLTATATEKVRSD
IMNSLLMKDHHVAIGSFDRKNLFYGVKSFSRSSQFVDQLVEEISKYVDNANSTIVYCTTV
KDTEEIFKSLLEAGIKAGIYHGQVANKAREEAHRSFIRDEFYVMVATVAFGMGIDKPNVR
YVIHYGCPKSLESYYQESGRCGRDGVPSACWLYFTRSDFAKADFYSAEARSASQRKAITE
AFSAAQHYCMLSTCRRKYLLDYFADEYAHDDCGNCDICTSSMKEKDLAREAFLLMACIQS
CGGRWGLNLPIGILRGSRSKKIVDAQFDKLPFHGLGKDLSANWWKGLAYQLISRDYLVET
FKDMYKTVSVSEKGLQFLRSSSPDHQPPLFLAETPEMDLDEKNIDIPSETSEINGLAFRE
FEGFSEAETRLYKILIEERIKLARATGTAPYAVCGDQTLKRISLTRPSTKARLANIDGVN
QHFIKLYGDNFLLSIKHLSEACNLSLDGEPTSQTSVPSKTLTVPINKKLTPAKFEAWKMW
HEDGLTFKEIANFPSRAVAIKEQTVLDYILEAAREGCKMNWTRFCEETGLTRETFLSIQN
AVSKVGREKLKPIKTELPEEVNYGQIKAYLTMQEAGVSAEVFSYKSEQSCNGDECLTEIS
EVLQNSIIQSDMQGDDDIGEAPGITCASSPGETEGAESHLLTESRKEAASSEGDFLIHTK
RQKVEAAEKESFRALDATEESILSWLKNSDDGVTLSDLLEHFNGSTEKSLVNLLCCLEGE
FLIYRKNNVYKLL
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggacatgaagtctacacttaagaaatattttggatacactgagtttcgaccttatcaa
aaggaaattattgagaagattttagatggaaaagactgtttggttataatggccaccggt
agtggcaaatcattgtgctatcagattcccccactgataaccggaaaggttgctgttgtt
ataagtccactcatctctttgatgcaagatcaggtcatgacattaaaacagaggggcatt
aaagctgactatctttcaagtgctcagactgatcgtggggtgcagtccaatgctgagttg
ggtcactatgatattctctatatgactccagaaaaggcttgtgctcttcctatcagtttc
tggtcaagattgttgaaagcagggatgtgtctcttggctgttgatgaagcacactgcatc
tcagaatggggtcatgatttcagggttgaatataagcaattggacaagctgcgtaatgtt
cttttgaatgttccatttgttggcttgacagcaactgctacagaaaaagttcggagtgac
attatgaactccttgctgatgaaagaccatcatgttgctattggctcatttgatcgcaaa
aatcttttttacggagtcaaatcttttagtcgtagttctcaatttgttgatcagctggtg
gaggagatctctaaatatgtagataatgcaaattcaacaatagtatattgtacaactgtc
aaagacactgaagagatcttcaaatcacttcttgaggcaggaatcaaagctggtatctac
catggtcaagtggctaataaagcacgtgaggaggctcataggtcatttatcagagatgaa
ttctatgtcatggttgcaactgttgcttttggcatgggtatagataaaccaaacgtaagg
tatgtgatacactacggctgcccaaagagtctggagtcttactaccaggaaagtggacga
tgcggtagagatggcgttccttcagcttgctggctttacttcacaagaagtgactttgca
aaagctgatttctactctgcagaagctcgttcagcatctcaaagaaaagctattacggaa
gcattttctgctgcacaacattactgcatgctgtcaacttgtagaagaaaatatttgttg
gattactttgcagatgagtatgcccatgatgattgtggaaactgtgatatttgcactagc
tcaatgaaggaaaaggacttggcaagagaagcatttcttcttatggcttgtattcagtca
tgtggaggccgttggggcttgaatctacccataggaatccttcgtggatctcgatccaag
aaaatagttgatgctcagtttgacaagctcccgtttcatggtcttgggaaagacttatct
gcaaattggtggaagggactggcttaccaattgatttcacgtgattatttggtagaaacc
ttcaaagatatgtacaaaactgtgagtgtcagtgaaaaaggattgcagtttctgagatct
agtagccctgatcatcaacctccactatttttggcggagactcctgaaatggatcttgat
gagaaaaacatagatatacccagtgaaacgagcgagatcaatggtttggcttttagggaa
tttgaaggattttcagaagctgaaactcgactgtacaaaatacttatagaagagagaatt
aagcttgccagagctactggaactgctccatatgcagtctgtggcgaccaaacattgaaa
aggataagcttgacaaggccttctacaaaagcaagactagcaaatatagatggcgtaaac
cagcatttcataaaactgtatggggacaattttcttctaagtattaagcatctatcagaa
gcttgcaatctttctctggatggggaaccaaccagtcaaacctctgttcccagtaagact
ctcacagttccaatcaataaaaagttaacaccagcaaaatttgaagcatggaagatgtgg
catgaggatggtctcacgttcaaagaaattgcaaattttcctagtagagcagtagcaata
aaggaacaaactgtgctagattatatactcgaagctgcacgagagggatgcaaaatgaat
tggactaggttttgtgaggagactgggcttacaagagagacattcttaagtatccagaat
gctgtctcaaaagttggtagggaaaaattgaagccgataaaaactgagttaccagaagag
gtaaattatggtcagataaaggcgtacttgacgatgcaagaggcaggagtatcagctgaa
gtattttcatacaaatctgaacaaagttgcaatggagatgaatgtttgactgaaatatca
gaagtactacagaactctattattcaatctgacatgcaaggagatgatgacataggtgaa
gcacctggcatcacttgtgcttcttctcctggggagactgaaggagcagaatctcatctc
ctgactgagagtaggaaagaagctgcatccagtgaaggtgattttctcattcatacaaaa
cgacagaaggtcgaagcagcagaaaaagaaagttttagggctctggatgccacggaagaa
tccatattgagctggctcaagaactctgatgatggggttaccctttctgatcttttggag
cacttcaatgggtcgaccgagaaatctttagtgaatcttctttgttgtcttgaaggtgag
tttctgatatataggaagaacaatgtatacaagcttttgtaa
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