Solanum lycopersicum (tomato): 101263950
Help
Entry
101263950 CDS
T02665
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101263950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sly03021
]
101263950
03019 Messenger RNA biogenesis [BR:
sly03019
]
101263950
Transcription machinery [BR:
sly03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101263950
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
101263950
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_12
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
101263950
NCBI-ProteinID:
XP_004231555
UniProt:
A0A3Q7EXZ1
LinkDB
All DBs
Position
2:complement(39717174..39733383)
Genome browser
AA seq
689 aa
AA seq
DB search
MDEGEGGLNFDFEGGLDTGPTHPTASVPVIQSFDHTAAAASSANINPPTVPAVGGQGDVG
FVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHT
IEDIKECNMYKLGFCPNGPDCRYRHAKMPGPPPPVEEIFQKIQHLASNNYGYSNRFNQNR
NANYSTQTDKSQASQAQNGTSLAVKSTATETPIIQQHQPHQQVQPPQLQGGPTQAQIHPN
GQQNQADRTAVVLPQGTSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENV
ILIFSVNRTRHFQGCGKMTSRIGGAANGGNWKHEHGTAHYGRNFSLKWLKLCELSFQKTH
HLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISLAAESKRLEEKAKGV
NPDNGKDNPDIVPFEDNEEEEDEEEESEDEDENFDQGFGPAALGRGRGRGIAWPPIMPFG
HGPRPPPGMRGFPPGMMGDGFSYGAMTPEGFPMTDHFGMGPRPFPPYGPRFSSDLMFHGR
PPAGGFGMMIGPGRPPFVGGMGPGATGPPRAGRAVRMHPSFIPPSSQPSQYPYRAKREQR
APVSDRNDRFSSDQGKGQEMMGSVNGPDGVHMQIGKSEHDNQFGAGNSLKNDGSESEDEA
PRRSRHGDGKKKRRDVDEDAATGSENRCQ
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaggagaagggggtttgaattttgattttgaaggtggcttagacactgggcca
acacacccaactgcatcagttccagtaatacaatctttcgatcacactgcagcagctgct
tcaagtgctaatattaacccgcctactgtcccagcggttggtggccaaggcgatgtagga
tttgttggaaatcgtcggagtttcaggcagactgtttgccgccactggctgcggtcactg
tgtatgaagggtgatgcctgcggcttccttcaccagtatgacaaatcacgaatgcccatt
tgtcgcttctttcgactctatggtgagtgccgtgaacaggactgtgtttataagcacacg
attgaggatatcaaggaatgcaacatgtacaaattggggttttgtccaaatggtcctgat
tgtcgctatagacatgcaaagatgcctgggcctccacctccagtggaagaaatctttcag
aaaattcagcacctggcatccaacaactatggttactcaaacaggtttaatcaaaatcga
aatgctaattattcaacccagacagacaaatctcaggcttcacaagcacagaatggaacg
agtcttgctgtgaaatctacagcaactgagacacccattatacaacagcaccagccgcat
caacaagttcagccacctcaactacaagggggcccaactcaagcacaaattcatcccaat
ggccagcaaaatcaagctgatagaactgcagtagtcctgccgcaaggaacttctaggtac
tttatagttaaaagctgcaaccgtgagaatcttgaattgtcagtacaacaaggagtttgg
gcaactcaaagaagcaatgaggctaaactaaatgaagcttttgactctgtggaaaatgtc
attctgatattttcagtcaaccggactagacattttcagggttgtggaaagatgacatct
agaattggtggcgctgctaatggaggaaactggaagcatgaacatgggactgcccattat
ggacgtaatttttcattgaaatggttaaagctatgtgaactgtccttccagaaaactcac
catttgaggaatccatacaatgagaacttaccagtgaagataagcagagattgtcaagaa
ttagagccctctgttggtgagcagttggcttctttgctttatcttgaaccagatagcgaa
cttatggcaatttcacttgcagcagaatccaagcgactagaagaaaaggcgaagggagtg
aaccctgacaatgggaaagataacccggatattgtaccatttgaagacaatgaagaagag
gaagatgaagaggaagaaagtgaggacgaggatgaaaactttgatcaaggttttggacca
gctgcgcttggtagaggaaggggcaggggaattgcatggcctccaattatgccttttgga
catgggcccaggcctccacctgggatgcgaggcttccctccaggcatgatgggcgatggg
ttttcttatggagctatgacacccgagggtttcccaatgaccgatcattttggaatgggt
ccccgaccttttcctccttatggcccacgattttcaagtgatttgatgtttcatggccgc
cctccagctggtggatttgggatgatgataggtcccggaaggccccctttcgtgggcgga
atgggtccgggagcgacaggcccacccagagctggtcgagcagttagaatgcatccatca
ttcattccaccctcatctcagccttctcaatatccttatagggctaaaagagaacagcgg
gctccagttagtgacaggaatgatagatttagctcagatcaaggtaagggtcaggaaatg
atgggttcagttaatggaccagatggagtgcatatgcaaatagggaaatctgaacacgat
aaccagtttggtgctggaaacagcctaaaaaatgacggaagcgaaagcgaggatgaagca
ccaagaagatcaagacacggggatggaaagaagaagaggcgggatgttgatgaagatgct
gcaactggctcagaaaataggtgtcagtaa
DBGET
integrated database retrieval system
