Solanum lycopersicum (tomato): 101264125
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Entry
101264125 CDS
T02665
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101264125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101264125
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101264125
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101264125
mRNA degradation factors
3'-5' decay
Ski complex
101264125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
Ski2_N
AAA_22
Motif
Other DBs
NCBI-GeneID:
101264125
NCBI-ProteinID:
XP_010321743
LinkDB
All DBs
Position
6:1007529..1031148
Genome browser
AA seq
1409 aa
AA seq
DB search
MDRLVAAKELSFRIGFTGHSGHLTIEPLPPVERDTPLNSIPDFILPPAFPKETPDTIKEY
IREKYLLPQLDADEFSPEKVGRQWEFDWFERAKILPDPSLPRSVVVPTWEVPFRRQRDRL
DNGRWEPKSEERDVSELTIGADDSGALPRIVGPPKDFVRGSINSRPFRPGGLDDSPSLGR
VVPDGATNGEWVREVLNGGPAQTAPPSFKQGPDLGDLKDTHSCSWNIYEDQSAATNTVEV
KLSDLSVQFDDLFKKAWQEDVTEFVGDGNGDEIAHVLYADDTLLQCEVDRVQALYLRVIF
SVSKVVPGLKFNLSKGHTSELQSEAEQLPSVKPELLQVEAEVNKSEVADKGLDTEISVLD
EILSVEAEGSISRLDVDNDGARQENDGWAVTGGGEVIVERFHDLIPDMALTFPFELDPFQ
KEAIYHLEKGNSVFVAAHTSAGKTVVAEYAFALAAKHCTRAVYTAPIKTISNQKYRDFCG
KFDVGLLTGDISIRPEASCLIMTTEILRSMLYRGADMIRDIEWVIFDEVHYVNDVERGVV
WEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKQKQIRVTGTTKRPVPLEHCLFYSGE
LYKVCENEEFLPHGFRAAKDVHKKKTTSSVSGGAGLRPGSSTAADKGRGQRRDSSSQAKQ
HKHSGPQRLGNFGGGWGTQSTGPGQNVMGFRRSEASLWLTLINKLLKKSLLPVVIFCFSK
NRCDKSADNIPGTDLTSSSEKSEIRIFCDKAFSRLKGSDRNLPQIVRIQSLLHRGIAVHH
AGLLPIVKEVVEMLFCRGLVKVLFSTETFAMGVNAPARTVVFDSLRKFDGKEFRQLLPGE
YTQMAGRAGRRGLDKTGTVVVMCRDEIPFENDLKHVIVGTATRLESQFRLTYIMILHLLR
VEELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPTKSVECIKGEPAIEEYYDMYLEA
EKYSHQIAEAVMQSPASQQYLSLGRAVVVKSQSAQDHLLGVVVKTPSSNNRQYIVLVLTP
ELPSTLETSSDRSNRKDQKNSEMQILLPKSRRGYDDEYCSSVTSRKGSGAVNIKLPHRGN
AAGMNYEVRGVDNKDFLYICVKKIKIDQVRLLEDVSAGAYSNAIQQLLSLKSEGNKYPPA
LDPVKDLKLKDMNLVEAYYKWNNLLQKMAQNKCHGCIKLDEHMKLAKELELHRAEVNALR
FEMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSVEELICTECLFENQL
DDLEPEEAVAIMSSFVFQQKETSESFLTPKLSQAKKRLHETAIRLGELQAQFKLPIDPKE
YAQENLKFGLVEVVYEWAKGTPFAEICELTDVPEGVIVRTIVRLDETCREFRNAAAIMGN
SALYKKMETASNVIKRDIVFAASLYITGV
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atggatcggttagtagcagcaaaggagctatcttttcgaatagggtttactggacacagt
ggtcacctcacgatcgagcctctccctcctgttgaacgcgatactcctctcaattctatt
cctgacttcattttgccacctgcatttccaaaggaaacacctgatacaataaaggaatat
attagggagaagtatctattgcctcagctagatgcagacgagttttctcccgaaaaagtt
ggaaggcagtgggagtttgattggtttgagagagctaaaatccttccagatccatctttg
cctcgatctgttgttgtccctacatgggaagtgccttttagacgtcagcgggacagattg
gataatggaagatgggaaccaaagtcagaggagagagatgtatcagaacttacaattgga
gctgatgattctggggctctaccgcgcattgttggaccaccaaaagattttgttagagga
agcattaacagtcgtccatttcgacctggtggcttggatgattccccttcgttgggcaga
gttgttcctgatggtgctacaaacggtgaatgggtaagggaggttcttaatggcggtcct
gcccaaaccgctcctccaagctttaagcaaggacctgatcttggcgatcttaaggataca
cattcatgctcttggaatatatatgaggatcagagtgctgctacgaacacagtggaggtg
aaactgagtgacttatccgtgcagtttgatgacttgttcaagaaagcttggcaagaggat
gtcacagagtttgttggagatggaaatggagacgagattgcacatgtgctttatgctgat
gataccctattgcaatgtgaagtagacagggtgcaagctctatatttgagggtcattttt
tcggtgtccaaagttgtgccagggctgaaatttaacttatccaaaggtcatacgtctgaa
ttgcaatctgaagcggaacaattgccatctgtgaagccagagctacttcaggttgaagct
gaagtaaacaagtctgaagtggctgacaagggtctagacactgagatatctgtcttggat
gagattttgtccgttgaagcagaaggatcaatatcaagattggatgtggataatgatggt
gcacgtcaagagaatgacggatgggctgttactggtggcggtgaagtaattgtagaacga
tttcatgatctcatccctgatatggctcttactttcccatttgaactcgacccctttcaa
aaggaggccatctatcatcttgaaaaagggaactctgtctttgttgctgctcatacatct
gctgggaagactgttgtggctgaatatgcatttgctttggcagctaaacattgtaccagg
gctgtatatacagctccaatcaaaacaatcagcaatcagaaatacagggatttttgtggg
aagtttgatgttggccttctcacaggtgatataagcataagacctgaggcctcttgtctt
ataatgaccactgagatattaaggtcaatgctttatagaggggctgatatgattcgggat
atagaatgggttatatttgatgaagtgcattatgtcaatgatgttgaaagaggtgttgtt
tgggaagaagttatcattatgctcccaagacatatcaactttgtcctcctttcagctacg
gtacccaacacaattgaatttgcagactggattggtcgtacaaaacaaaagcaaattcgt
gttactgggacgaccaaaagacctgtccctttggaacattgtctcttctattctggggag
ctttacaaagtgtgtgagaatgaagagtttctgcctcatggatttagagcagccaaagat
gtacataagaagaagaccacaagttctgtctctggcggcgccggcttgcgtcctgggtct
tcaacagctgctgataagggtcgagggcagaggcgtgatagctcttctcaggcaaagcag
cacaagcattctggtccccaaagattggggaattttggtggtggttggggaacgcaaagc
actgggcctggacagaatgttatggggtttaggagatcagaggcgtctttgtggttgacg
ctgattaataaactcttgaagaaatcactgttacctgtggttatattttgtttttcgaag
aatcgatgtgacaaatcagctgataacatccctggtaccgatctcacaagtagctctgag
aaaagtgaaattaggatattctgtgataaagcattttcgcggcttaagggatccgacaga
aacttaccgcagattgtcagaattcaaagccttctccacaggggcattgctgtgcatcat
gcagggctcctcccaattgtcaaggaagttgtagaaatgcttttttgtcgaggtttggtt
aaggttctgttctcgacagagacttttgcaatgggagttaatgctccagccaggacggtt
gtttttgattctttaagaaagtttgatggcaaggaatttaggcagctacttcccggagag
tacactcagatggctgggcgtgctggaaggagaggacttgataagactggtacagttgtg
gtgatgtgccgagatgagatcccttttgaaaatgatttgaagcatgtaatagttggtact
gcgactaggcttgaatctcagtttcgactgacctacatcatgattttgcatctacttcgg
gttgaagaactgaaggttgaggacatgctgaaaagaagttttgctgaatttcatgctcag
aaaaaactacctgagcaacaacaactcttgatgcgaaagcttgctcagcctacaaaatct
gttgaatgcataaagggtgaaccagcaattgaggaatactatgacatgtatttggaggca
gagaaatatagccaccaaatagcagaagcagtaatgcagtcgccagcttctcagcagtac
cttagtcttgggagagcagtggttgtaaaatcacaatcagctcaagatcacttactaggc
gttgtggtgaagacaccttcctctaacaacagacaatatatagttctagttctgactcca
gaattgccttcaactctggaaacttcgtcagatagaagcaacaggaaagatcaaaaaaat
tctgaaatgcagatactattgcctaaatcaagacggggttatgatgatgagtattgttcg
tcagtcacctcccggaagggatctggcgctgtcaacatcaaattgcctcaccgcggtaat
gctgccggcatgaattatgaggttcgaggagttgataacaaggatttcttgtatatatgt
gtgaaaaagattaagatcgaccaagttcggcttcttgaagatgttagtgctggggcctac
tctaacgcaatacaacagctgctcagtttgaaatctgaaggaaataagtatcctccagcc
ttagatccggttaaagatctgaagttgaaggacatgaatcttgtggaagcatactacaaa
tggaataatctcttgcagaaaatggcacagaataagtgtcatggttgtattaaattggat
gagcacatgaaattggctaaagaattagagctgcaccgagcggaagtgaatgctttgagg
tttgaaatgtcagatgaggcacttcagcaaatgccagattttcagggtcggatagatgtg
ttaaaagaaattggctgcatagatgctgatcttgtagttcaaatcaaaggtcgtgttgct
tgcgaaatgaattccgtagaggagctgatatgcacagaatgtttatttgagaatcagctt
gatgacctggagccagaagaggcagtggcgatcatgtcttcctttgtgtttcagcaaaag
gagacttctgaatctttcctcacgccaaagctttctcaggctaaaaagagattacatgaa
actgcaataagacttggggagcttcaggctcagtttaagctgccgattgacccaaaggag
tatgcccaagagaaccttaagtttggtttggttgaagtggtatatgaatgggcaaagggg
accccatttgctgagatatgtgaactcacagatgtccctgaaggtgttatagtgaggact
attgttagattagacgagacttgtcgtgaatttagaaatgctgctgcaattatgggcaac
tctgcactgtacaagaaaatggaaactgcatctaatgtgatcaagcgcgatatcgtgttt
gcagctagcttatatattaccggagtttga
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