KEGG   Solanum lycopersicum (tomato): 101264409
Entry
101264409         CDS       T02665                                 
Name
(RefSeq) coatomer subunit beta'-1
  KO
K17302  coatomer subunit beta'
Organism
sly  Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:sly00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:sly04131]
    101264409
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sly04147]
    101264409
Membrane trafficking [BR:sly04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    101264409
Exosome [BR:sly04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   101264409
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_SCAP ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_HPS5 NBCH_WD40 WDR90_beta-prop_4th PEP5_VPS11_N TPR_GEMI5 Beta-prop_DCAF4 Beta-prop_WDR75_2nd Beta-prop_SPT8 WD40_RFWD3 WD40_like Beta-prop_WDR35_TULP_N Beta-prop_Nup120_160 WD_LRWD1 TPR_8
Other DBs
NCBI-GeneID: 101264409
NCBI-ProteinID: XP_004252329
LinkDB
Position
12:complement(60553390..60568329)
AA seq 925 aa
MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQTQTMAKSFEVTELPV
RSAKFIPRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD
MLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
LDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE
LPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYMRSSRRVVIGYDEGTIMVKLG
REVPVASMDNSGKVIWAKHNEVQTVNIKSVGADYEVADGERLPLAVKELGSCDLYPQNLK
HNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESTSKIKIFSKSFQ
EKKSIRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVAI
ASDTSFYILKYNRDVVSAHLDSGKSVDEQGVEEAFELLNEINERVRTGIWVGDCFIYNNS
SWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVFLIDKEFNVVGYTLLLGLIEYKTLVM
RGDWDRANEVLPSIPKEHHNSVAHFLESRGMIEEALEVATDPDYRFELAIQLGKLEIAKE
IAAVAQSESKWKQLGDLAMSSGKLEMAEECLKHANDLSGLLLLYSSLGDAEGITLLASLA
KEHGKNNVAFLCMFMLGKVEECIQLLIDSNRIPEAAFMARSYLPSKVPEIVSIWRKDLSK
VNQKAAEALADPEEYPNLFEHWQIAHAVEARVAEERGVYPPAADYGNCADRPTTNLVEAF
SNLRMDEEPHENGVLDHEDAELNGDEVLERGEDDLQQEGQEERGEDDLQQEGQEEAVVVD
ADSTDGAVLVNGNEGDEEYVLTPHH
NT seq 2778 nt   +upstreamnt  +downstreamnt
atgcctctgaggttggagattaagagaaaacttgctcaaagatcggaaagggtaaagtca
gtggatctacatccttccgagccatggatattggcaagtttgtattcagggactgtatgc
atctggaactaccagacccagacaatggctaaatcatttgaagttactgaattaccagtt
aggtcagcgaagtttataccacgcaagcaatgggttgttgctggtgctgatgacatgttt
attcgtgtttacaattacaataccatggataaagtcaaagtattcgaggcacacacagat
tatattaggtgtgtggctgtccatcctacacttccatatgtgctgtcatcatctgatgac
atgctaataaagctctgggattgggagaagggatggttatgcactcaaatatttgaaggt
cattcccattatgtgatgcaagttacctttaatccgaaagacaccaatacttttgctagt
gcatctcttgatcggactataaagatttggaaccttggctctcctgatccaaatttcacg
ctggatgctcatcttaaaggggttaattgtgtagactatttcaccgggggtgataaaccc
tatctaatcactggttctgatgatcacactgctaaggtgtgggactatcagacaaaaagt
tgtgttcagactcttgaaggccacacccacaatgtctctgctgtatgttttcatcccgag
cttccgattataattacaggttctgaagatggtactgttcgtatatggcactcaaccact
tatagacttgagaacactttgaattatggtcttgaaagagtatgggcaattggttacatg
agaagttcaaggagggttgttattggttatgatgagggaaccatcatggtgaaacttggc
cgagaagtacctgttgccagtatggataacagtggaaaagttatttgggctaagcacaat
gaagttcagactgttaacatcaagagtgtaggggcagattacgaggttgctgatggagaa
agactgcctttggctgtcaaggaactgggatcctgtgacctctacccacaaaatttgaag
cataatccaaatggaaggtttgtggttgtttgtggagatggagaatatatcatatatact
gctctagcttggagaaataggtcatttggctcagctctggaatttgtttggtcttcggat
ggagaatatgctgtgagggaaagtacttcaaagattaagatcttcagcaaaagtttccag
gagaagaagagcatccgacctactttctctgctgagcgcatctatgggggtactttattg
gcaatgtgctccaatgatttcatttgtttctatgattgggctgaatgcaggttgatacgg
agaattgatgttaatgtcaaaaatctatactgggccgacagtggtgatctggtggcaatt
gcaagtgatacatcgttctacatactaaagtataatcgagatgtggtgtctgcacattta
gatagtggaaaatcagtagatgaacaaggtgttgaagaagcttttgaacttcttaatgag
atcaatgaacgggtcaggactgggatttgggttggggattgcttcatttacaataattct
tcctggagacttaactattgtgttggtggtgaggtgaccacaatgtttcaccttgatcgt
cccatgtacctactgggatatcttgctaatcagagcagggttttcctgattgacaaggag
tttaatgttgtgggatatactttactccttggcttgattgagtacaagacacttgtgatg
cgtggtgactgggacagagcaaatgaggtcttaccatcaattcctaaggagcatcacaac
agtgttgctcatttcttggaatcacgtggaatgatagaggaagcattagaagttgctaca
gaccctgactacagatttgaactagctatacagctgggtaaattagagatcgcaaaggaa
attgcggcagtggcacagagtgagtccaaatggaagcagttgggtgacctagccatgtct
agtggaaagcttgagatggcagaggagtgtttgaagcatgcaaatgacttgagtggtttg
ttgctactctattcttctcttggagatgctgaaggaataactctactagcttctcttgca
aaagagcacgggaaaaacaatgttgcattcctttgcatgttcatgttgggtaaagtggag
gagtgcattcagctgttgattgacagcaatcggatacctgaggctgcatttatggcaaga
tcttatttgcctagtaaggttcctgaaatagtttcaatttggagaaaggacctcagtaag
gttaaccagaaagcagcagaagctttagctgaccctgaagaatatcctaacctgtttgag
cactggcaaattgcacacgctgttgaagctagagttgcggaggaaaggggtgtctatcca
ccagcggctgattatggaaattgtgctgatagaccaactactaaccttgtagaagctttc
agcaacttgagaatggatgaagaaccacatgaaaacggagtgttggatcatgaggatgca
gaactgaatggtgatgaggtgctagaacggggtgaagatgaccttcaacaagagggccaa
gaagaacggggtgaagatgaccttcaacaagagggccaagaagaagctgttgtggtggat
gctgactctactgatggagcagtactcgttaatggaaatgagggtgatgaagagtatgtt
cttacaccacatcattag

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