Solanum lycopersicum (tomato): 101264453
Help
Entry
101264453 CDS
T02665
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101264453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101264453
03012 Translation factors [BR:
sly03012
]
101264453
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101264453
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101264453
Translation factors [BR:
sly03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101264453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
SR-25
NACHT
AAA_19
Motif
Other DBs
NCBI-GeneID:
101264453
NCBI-ProteinID:
XP_004228595
LinkDB
All DBs
Position
1:1896900..1906450
Genome browser
AA seq
1031 aa
AA seq
DB search
MSVRLLNHPHSSALLRFHFCNTSLRSSLQRSYSFSRSVMAYRPNYRGGRRGGGGRSGGGR
GGGGRGGGGGRGGEQRWWDPVWRAERLRQQAAEMEVMNENEWWGKMEQFKRGGEQEMVIR
RNFSRDDQQKLSDMAYQLELYFHAYNKGKALVASKVPLPSYRADLDERHGSTQKEIRMST
EIEERVGNLLSSSQDAVSAGTSSSTSGTSAKLLSKAVETTKPKLSIEDDIATKRLNVELK
QKQEKTRGSEKVKEMISFREKLPAFKVKSEFMEAVANNQVLVVSGETGCGKTTQLPQFIL
EEEISSLRGVDCNIICTQPRRISAISVAARISSERGDSLGDTVGYQIRLEAKRSAQTRLL
FCTTGVLLRRLVQDPDLTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT
INAELFSKYFRDAPTIHIPGLTYPVAELFLEDVLEKTRYLIKSEADNFQGNSRRRMRQQD
SKRDPLTDLFEDVDIGSHYKGYSMTTRQSLEAWSGSLLDLGLVEASIEYICRCEGEGAIL
VFLSGWDEISKLLDKIKANNFLGDARKFLVLPLHGSMPTVNQREIFDRPPANTRKIVLAT
NIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVC
YRLYPKLIHDAMAQYQLPEILRTPLQELCLHIKSLQFGAIESFLAKALQPPDALSVHNAI
ELLKTIGALDDTEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALTIAAALAHRDPF
VLPINRKEEADAAKRSFAGDSCSDHIALLKAFEGWKDAKRYGKERTFCWENFLSPVTLQM
MEDMRNQFIDLLSDIGFVDKSRGAKAYNEYSNDLEMVCAILCAGLYPNVVQCKRRGKRTA
FYTKEVGKVDIHPASVNASVHLFPLPYLVYSEKVKTSSIYIRDSTNISDYSLLMFGGNLT
PSKSGDGIEMLGGYLHFSASKSVLDLIKKLRVELDKILKRKIEEPHFDVSVEGKGVVAAV
VELLHSQDIRY
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgcgtcttctaaaccacccacactcctccgcccttctccgttttcacttctgt
aatacctctcttcgttcatcactccaaaggagttactctttttcccgttccgttatggct
tatcgcccgaactaccgaggcggtcgccgcggcggcggaggacgcagtggcggaggccgt
ggtggtggtggtcgtggaggaggaggaggacgtggtggtgaacagagatggtgggatcct
gtatggcgtgctgaacgccttcggcagcaggcagctgagatggaggtgatgaatgagaat
gagtggtgggggaagatggagcagtttaagagaggaggggagcaggaaatggttataagg
cggaattttagtagggatgaccaacaaaagttgtctgatatggcgtatcaattagaactt
tacttccatgcttataacaagggaaaggcacttgttgcaagcaaagtcccattgccaagc
taccgtgctgatcttgatgagcgtcatggatctacacagaaagagattaggatgtccact
gagattgaggaaagagttggaaatctattgagtagttcacaagacgcagtatctgctggg
acttcctcttcaacatctggtacttctgccaaattattatccaaagctgtagaaacaacc
aaacctaagttgtctatagaggatgatattgccaccaaaagacttaatgtggaacttaaa
cagaaacaggaaaagacaaggggaagtgaaaaagtcaaggaaatgatctcattcagggaa
aaacttcctgcatttaaagtgaaatctgaatttatggaagctgttgcaaataatcaggtc
ttggtagtttctggagagactggctgtggaaagacaacacagctccctcaattcattcta
gaagaggagatatcatcccttcgtggtgttgattgtaacattatatgcactcagcctcgc
cgtatatctgcaatatcagttgctgctcgaatatcctctgaaagaggagacagtcttggt
gatactgttggctaccagatccggctggaagcaaagcgctctgctcaaacacggttgcta
ttttgcacaacaggagtgttactgcggcggctggttcaggaccctgatttgactggtgtt
agccatctgcttgttgatgaaatccatgaaagaggcatgaatgaagacttcctcttgata
attttacgagacctccttcctcgacgacctgatttgcgtctcattctgatgagtgctact
attaatgctgagttgttctccaaatactttagagatgcacccacgattcatataccgggt
ttgacgtatccagtggcagagctgtttcttgaagacgtgttggagaagactcgttacctt
ataaaatccgaagcagacaatttccaaggaaactcaaggagaaggatgaggcaacaagat
tctaaaagagatcctctgactgatctttttgaggatgtggacattggttcacattacaaa
ggctacagcatgactacaagacaatctctggaagcatggtctggttcactgcttgatttg
ggtcttgtggaagcatcaattgaatatatttgtcgctgtgaaggtgaaggtgcaattctt
gtgttcctatctggttgggatgagatttctaagctacttgataaaattaaggctaacaac
ttccttggagacgccaggaagtttttagtccttcctcttcacggttcaatgccaacagta
aatcaacgagaaatatttgatcgtccacctgctaacacgaggaaaattgtgcttgcaacc
aacatagctgagagcagtataactatagatgatgtcgtgtatgtcatagactgtgggaag
gcgaaagagactagctatgatgcacttaacaagttagcttgtttattaccttcatggata
tcaaaggcctcagcacatcagaggcgtggtcgtgcgggccgtgtacaacctggagtttgt
tataggttgtatccgaaactaatacatgatgctatggcacaatatcaactacctgagatt
cttcgaacaccactacaagagctttgtctccatattaagagtttgcagttcggcgctatt
gaatcctttttggccaaggcacttcaacctccagatgctctctctgtccacaatgctatt
gaacttctcaaaactattggagctctggatgatacagaagaacttactccacttggccgc
catctttgcactctaccgctggatccgaatattggaaagatgcttctgatggggtccatc
ttccaatgtcttaaccctgcactgactattgctgctgctctggcacaccgtgatccattt
gtccttccaataaacaggaaagaggaagccgatgctgctaaaagatcctttgctggtgat
tcttgcagtgatcatattgcacttcttaaagcatttgaaggatggaaagatgctaaacgt
tacggaaaagaaagaaccttctgctgggaaaatttcttatctcctgtaaccttgcagatg
atggaagacatgagaaatcagttcattgacctactgtcagatattggttttgtggataaa
tcacgaggagccaaggcatacaatgaatatagcaatgatttagagatggtatgcgccatc
ctttgtgcaggcctctatccaaatgtcgtgcagtgtaaaagaagaggaaagcgtacagca
ttctacacgaaggaagttggaaaagtagacatccacccagcatctgtcaacgctagtgtc
catcttttccctcttccctacttagtttacagtgagaaagtcaaaacctcaagcatttat
atcagagattcaacaaacatatccgattattctcttcttatgttcgggggtaatctcact
ccaagcaaaagtggagacggcattgaaatgcttggaggctatcttcacttttccgcgtca
aaaagtgtgttggatttaataaagaaactccgcgtggaactggacaaaatattaaaaagg
aaaatcgaagagccccactttgacgtctcagtcgagggaaagggtgtagttgctgctgtg
gttgagttacttcatagtcaagatatacggtactga
DBGET
integrated database retrieval system
