Solanum lycopersicum (tomato): 101264599
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Entry
101264599 CDS
T02665
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X2
KO
K14406
cleavage stimulation factor subunit 1
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101264599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101264599
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
101264599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_EML
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
WDR90_beta-prop_4th
Ge1_WD40
Beta-prop_NOL10_N
Cytochrom_D1
Beta-prop_NWD2_C
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_VPS8
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
101264599
NCBI-ProteinID:
XP_010314210
LinkDB
All DBs
Position
12:52463847..52494979
Genome browser
AA seq
329 aa
AA seq
DB search
MNNTKGPSKNIPKHESRHISEHKNVARCARFSPDGRFLATGSADTSIKLFEIVKVKQMKQ
PEARDGPVRPVVRTFYDHQQPINDLDFHPQNTVLISGSKDRTIKFFDFSKAVAKRAFRVI
QDTHNVRSVSFHPSGDYLLAGTDHSIPHLYDINTFKCYLPLNFQDMGVNSAINQVRYSST
GGMYVTASKDGAIRLWDGVTASCVRSIDGAHGAAEATSANFTKDQRYILSSAKDSSVKLW
EVGTGRLVKQYVGATHTQLRCQAVFNDTEEFVLSIDESLNEIVAWDSLTTEIVARWPSNH
IGAPRWLEHSPVEAAFVSCGIDRSIRHWT
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatacaaaagggccgtcaaaaaatatcccaaagcatgagtcacgacatatttcc
gagcacaagaatgttgcaaggtgtgccagatttagccctgatggaagattccttgctact
ggaagtgcagacacatcaattaaattgtttgagattgtaaaagttaagcaaatgaagcag
ccagaagcaagggatggcccagtgaggcctgttgtacgaactttttatgatcatcaacaa
cctataaatgacttggattttcatccacaaaatacagtactcatatctggatcaaaagat
cgcaccatcaagttctttgatttttccaaagcggtagcaaagagagcatttagagtgatt
caggatacacataatgtaaggtcggtgtcatttcatccttcaggggactatcttctggca
ggaactgatcattcaattccccacctatatgacataaacactttcaaatgctacctgcca
ctaaatttccaagatatgggtgtcaatagtgctattaatcaggttaggtattcatctaca
ggtggaatgtatgtaactgcatccaaagatggtgcaattcggttgtgggatggggtaaca
gctagctgtgtgcgatctatagatggtgcacatggagcggcagaggctacaagtgcaaat
ttcacgaaggatcaaaggtatattctctcttcggcaaaagactcttcggtgaagctttgg
gaagttggcacaggaagactggtcaaacaatatgttggagctacacatacacagttgcgc
tgccaggctgttttcaatgatacagaagaatttgtattatcaattgatgaatctctaaat
gagattgttgcatgggattctctgacaactgaaatagtggctagatggccctccaaccat
attggtgcaccccgttggcttgagcattccccagtagaagctgcatttgtgtcttgtggg
attgaccgatccattcggcactggacttag
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integrated database retrieval system
